RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 DPCR1Q3MIW9 517 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 TMEM240Q5SV17 173 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 UBXN11Q5T124 520 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 MPZL3Q6UWV2 235 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 GOLGA5Q8TBA6 731 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 POMGNT1Q8WZA1 660 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 DHTKD1Q96HY7 919 aaPredicted RBP12.68□□□□□ -0.38
YBX3-213ENST00000542641 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.68□□□□□ -0.383e-19■□□□□ 11.3
YBX3-213ENST00000542641 TRAIPQ9BWF2 469 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 EIF2AQ9BY44 585 aaKnown RBP12.68□□□□□ -0.38
YBX3-213ENST00000542641 GZF1Q9H116 711 aaPredicted RBP12.68□□□□□ -0.38
YBX3-213ENST00000542641 KCTD10Q9H3F6 313 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 AGPAT3Q9NRZ7 376 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 C1orf112Q9NSG2 853 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 TYW1Q9NV66 732 aaKnown RBP12.68□□□□□ -0.38
YBX3-213ENST00000542641 CGNQ9P2M7 1197 aaKnown RBP12.68□□□□□ -0.38
YBX3-213ENST00000542641 DACH1Q9UI36 760 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 PCDHB2Q9Y5E7 798 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 STYXL1Q9Y6J8 313 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 ZMYM2Q9UBW7 1377 aa12.68□□□□□ -0.38
YBX3-213ENST00000542641 SCN5AQ14524 2016 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 A0A0B4J269 797 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 A0A0U1RQF3 1178 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 ZBBXA8MT70 800 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 CLIC2O15247 247 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 CALUO43852 315 aaPredicted RBP12.67□□□□□ -0.38
YBX3-213ENST00000542641 BAIAP3O94812 1187 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 MCF2P10911 925 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 SKIP12755 728 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 GARTP22102 1010 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 ADSSP30520 456 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 RAB27AP51159 221 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 MCL1Q07820 350 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 NOLC1Q14978 699 aaKnown RBP eCLIP12.67□□□□□ -0.38
YBX3-213ENST00000542641 DCAF4L1Q3SXM0 396 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 CENPPQ6IPU0 288 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 ARMCX5Q6P1M9 558 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 NELFBQ8WX92 580 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 LINC01599Q8WXQ3 324 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 P2RX5Q93086 422 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 TSG101Q99816 390 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 MSTO1Q9BUK6 570 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 HAPLN2Q9GZV7 340 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 CDT1Q9H211 546 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 SEMA6BQ9H3T3 888 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 FAM105AQ9NUU6 356 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 ANO10Q9NW15 660 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 CTNND2Q9UQB3 1225 aa12.67□□□□□ -0.38
YBX3-213ENST00000542641 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.66□□□□□ -0.38
YBX3-213ENST00000542641 BICDL2A1A5D9 508 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 C9IYK1 514 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 ABLIM1O14639 778 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 AMHP03971 560 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 CCDC192P0DO97 292 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 CCNE1P24864 410 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 KCNJ6P48051 423 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 FAM189BP81408 668 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 PAK1Q13153 545 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.66□□□□□ -0.382e-7■■■■□ 25
YBX3-213ENST00000542641 ECHDC2Q86YB7 292 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 THNSL1Q8IYQ7 743 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 HACE1Q8IYU2 909 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 RNF169Q8NCN4 708 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 HERVK_113Q902F9 699 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 CBWD1Q9BRT8 395 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 UBE2OQ9C0C9 1292 aaKnown RBP12.66□□□□□ -0.38
YBX3-213ENST00000542641 PCIF1Q9H4Z3 704 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 AGO2Q9UKV8 859 aaKnown RBP12.66□□□□□ -0.38
YBX3-213ENST00000542641 TRAF3IP3Q9Y228 551 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 IPPQ9Y573 584 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 PCDHB7Q9Y5E2 793 aa12.66□□□□□ -0.38
YBX3-213ENST00000542641 LTBP2Q14767 1821 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 TRIM49BA6NDI0 452 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 KIAA0391O15091 583 aaKnown RBP12.65□□□□□ -0.38
YBX3-213ENST00000542641 OGTO15294 1046 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 ZNF623O75123 536 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 NR3C1P04150 777 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 CYP2J2P51589 502 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 PMS1P54277 932 aaKnown RBP12.65□□□□□ -0.38
YBX3-213ENST00000542641 STX17P56962 302 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 OSTNP61366 133 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 WDR5P61964 334 aaKnown RBP12.65□□□□□ -0.38
YBX3-213ENST00000542641 LRRC63Q05C16 580 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 KYAT1Q16773 422 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 SEZ6Q53EL9 994 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 CT47A1Q5JQC4 288 aaPredicted RBP12.65□□□□□ -0.38
YBX3-213ENST00000542641 ANKRD40Q6AI12 368 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 MRPL10Q7Z7H8 261 aaKnown RBP12.65□□□□□ -0.38
YBX3-213ENST00000542641 C12orf56Q8IXR9 622 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 HS6ST3Q8IZP7 471 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 CEP120Q8N960 986 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 SMG8Q8ND04 991 aaKnown RBP12.65□□□□□ -0.38
YBX3-213ENST00000542641 NOC3LQ8WTT2 800 aaKnown RBP12.65□□□□□ -0.38
YBX3-213ENST00000542641 PGBD4Q96DM1 585 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 SAAL1Q96ER3 474 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 GDF15Q99988 308 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 APOL6Q9BWW8 343 aa12.65□□□□□ -0.38
YBX3-213ENST00000542641 MTIF3Q9H2K0 278 aaKnown RBP12.65□□□□□ -0.38
YBX3-213ENST00000542641 NXF3Q9H4D5 531 aaKnown RBP12.65□□□□□ -0.38
YBX3-213ENST00000542641 ELAC1Q9H777 363 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms