RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 TRAPPC9Q96Q05 1148 aa7.75□□□□□ -1.17
LIMCH1-207ENST00000508466 THAP2Q9H0W7 228 aa7.75□□□□□ -1.17
LIMCH1-207ENST00000508466 TMEM260Q9NX78 707 aa7.75□□□□□ -1.17
LIMCH1-207ENST00000508466 TTC7AQ9ULT0 858 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-207ENST00000508466 R3HDM2Q9Y2K5 976 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-207ENST00000508466 MYH4Q9Y623 1939 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 H3BRJ5 948 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 TMX2-CTNND1H3BSU7 103 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 GSC2O15499 205 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 VIL1P09327 827 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 PDGFRBP09619 1106 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 H2AFZP0C0S5 128 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 RPL10P27635 214 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 CETN2P41208 172 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 EPHB1P54762 984 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 HPCAP84074 193 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 CDK17Q00537 523 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 POU5F1Q01860 360 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 KCNH2Q12809 1159 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 KLHL35Q6PF15 583 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 H2AFVQ71UI9 128 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 TMPRSS6Q8IU80 811 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 SLF2Q8IX21 1173 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 POU5F2Q8N7G0 328 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 PRELID2Q8N945 189 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 RUBCNQ92622 972 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 SPATA17Q96L03 361 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 GCNAQ96QF7 691 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 LZTS2Q9BRK4 669 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 TXLNGYQ9BZA5 131 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 ATP8A2Q9NTI2 1148 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 KAT6AQ92794 2004 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 ALKQ9UM73 1620 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 ANKRD26Q9UPS8 1709 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 CENPFP49454 3210 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 B2RBV5 119 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 ADCY3O60266 1144 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 NAT1P18440 290 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 CA4P22748 312 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 RPL13P26373 211 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 HOXD12P35452 270 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 PGM1P36871 562 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 PLCB3Q01970 1234 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 FUT2Q10981 343 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 IFIT5Q13325 482 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 SMAD1Q15797 465 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 SFT2D3Q587I9 215 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 SLC30A10Q6XR72 485 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 IRF2BP2Q7Z5L9 587 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 AGGF1Q8N302 714 aaeCLIP7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 ZBTB8BQ8NAP8 495 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 CSRNP1Q96S65 589 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 IWS1Q96ST2 819 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 TAS2R1Q9NYW7 299 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 COG5Q9UP83 839 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 PCDHB13Q9Y5F0 798 aa7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 FAM208AQ9UK61 1670 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-207ENST00000508466 PXDNQ92626 1479 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 ARHGAP42A6NI28 874 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 TTLL13PA6NNM8 815 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 KLRF2D3W0D1 207 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 H3BSA7 217 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 HOXB7P09629 217 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 CDK4P11802 303 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 SCG2P13521 617 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 RCVRNP35243 200 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 MAPK10P53779 464 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 EN1Q05925 392 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 MAPK7Q13164 816 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 BTG3Q14201 252 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 RRP1BQ14684 758 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 PKN2Q16513 984 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 GRAMD4Q6IC98 578 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 TMEM53Q6P2H8 277 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 MARK2Q7KZI7 788 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 OTOAQ7RTW8 1153 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 ALYREFQ86V81 257 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 COL23A1Q86Y22 540 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 BLIDQ8IZY5 108 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 DDX12PQ92771 950 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 ABHD8Q96I13 439 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 ZSCAN10Q96SZ4 725 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 SLX1AQ9BQ83 275 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 CENPKQ9BS16 269 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 TIPINQ9BVW5 301 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 CLDN3O15551 220 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 ZC3H11AO75152 810 aaKnown RBP eCLIP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 PDE5AO76074 875 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 CSF1RP07333 972 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 SSTR3P32745 418 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 AQP4P55087 323 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 MAP7Q14244 749 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 RASA3Q14644 834 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 ECM1Q16610 540 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 MAPK6Q16659 721 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 TBC1D10BQ4KMP7 808 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 CENPPQ6IPU0 288 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 RGS9BPQ6ZS82 235 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 ANO5Q75V66 913 aa7.73□□□□□ -1.17
LIMCH1-207ENST00000508466 NLRP10Q86W26 655 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms