RNA–Protein interactions for RNA: ENST00000374253.9

CNKSR1-202, Transcript of connector enhancer of kinase suppressor of Ras 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CNKSR1, Length 2,538 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR1-202ENST00000374253 CLMNQ96JQ2 1002 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 IFT74Q96LB3 600 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 ELP3Q9H9T3 547 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 PDLIM7Q9NR12 457 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 LCTP09848 1927 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 GLE1Q53GS7 698 aaKnown RBP17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 ZBTB41Q5SVQ8 909 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 ACTRT1Q8TDG2 376 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 HELQQ8TDG4 1101 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 SCFD2Q8WU76 684 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 EXOC4Q96A65 974 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 ZNF302Q9NR11 478 aa17.24■□□□□ 0.35
CNKSR1-202ENST00000374253 ATP2A1O14983 1001 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 P4HA2O15460 535 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 KRT5P13647 590 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 SSTR3P32745 418 aaPredicted RBP17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 LIG4P49917 911 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 MESDQ14696 234 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 DNAJC21Q5F1R6 531 aaKnown RBP17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 FBXL13Q8NEE6 735 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 MCPH1Q8NEM0 835 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 SPIRE2Q8WWL2 714 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 ALG3Q92685 438 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 KRT35Q92764 455 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 NTPCRQ9BSD7 190 aaKnown RBP17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 TMEM8AQ9HCN3 771 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 RAB20Q9NX57 234 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 ANKFY1Q9P2R3 1169 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 NOCTQ9UK39 431 aaKnown RBP17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 SYNGAP1Q96PV0 1343 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 IRF6O14896 467 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 DDX3YO15523 660 aaKnown RBP17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 CAPN2P17655 700 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 RFX1P22670 979 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 NLRP11P59045 1033 aaKnown RBP17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 C2CD6Q53TS8 623 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 SPOPLQ6IQ16 392 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 FAM71AQ8IYT1 594 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 GPD1LQ8N335 351 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 ZNF516Q92618 1163 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 CDHR1Q96JP9 859 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 TRIM31Q9BZY9 425 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 CENPFP49454 3210 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 NFASCO94856 1347 aa17.23■□□□□ 0.35
CNKSR1-202ENST00000374253 EDN1P05305 212 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 PGK2P07205 417 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 UBA1P22314 1058 aaKnown RBP17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 MARK3P27448 753 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 PPARDQ03181 441 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 DRP2Q13474 957 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 XKR3Q5GH77 459 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 SCARA3Q6AZY7 606 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 EMBQ6PCB8 327 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 ZNF668Q96K58 619 aaPredicted RBP17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 HAPLN2Q9GZV7 340 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 ALG6Q9Y672 507 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 ARID2Q68CP9 1835 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 TTI1O43156 1089 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 KRT14P02533 472 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 ALDH5A1P51649 535 aaPredicted RBP17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 MFAP3P55082 362 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 FMO1Q01740 532 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 SKIDA1Q1XH10 827 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 ARL8AQ96BM9 186 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 MFSD14AQ96MC6 490 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 NT5C1BQ96P26 610 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 ZIM3Q96PE6 472 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 ARHGAP28Q9P2N2 729 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 PTPRJQ12913 1337 aa17.22■□□□□ 0.35
CNKSR1-202ENST00000374253 OATP04181 439 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 CYP11B1P15538 503 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 TNNI1P19237 187 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 GLRA2P23416 452 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 PAK2Q13177 524 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 LY6KQ17RY6 165 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 NOL9Q5SY16 702 aaKnown RBP17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 LBX2Q6XYB7 198 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 SLC17A8Q8NDX2 589 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 TMEM174Q8WUU8 243 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 SHC3Q92529 594 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 RNPC3Q96LT9 517 aaKnown RBP17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 NEUROG2Q9H2A3 272 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 ERVK-5Q9HDB9 667 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 SOWAHBA6NEL2 793 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 MAPK13O15264 365 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 KCTD16Q68DU8 428 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 TRIM50Q86XT4 487 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 AFAP1L1Q8TED9 768 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 FBXL18Q96ME1 805 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 TRIM51Q9BSJ1 452 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 TARS2Q9BW92 718 aaKnown RBP17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 DPH5Q9H2P9 285 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 CSADQ9Y600 493 aa17.21■□□□□ 0.35
CNKSR1-202ENST00000374253 TTLL13PA6NNM8 815 aa17.2■□□□□ 0.34
CNKSR1-202ENST00000374253 CES2O00748 559 aa17.2■□□□□ 0.34
CNKSR1-202ENST00000374253 DKC1O60832 514 aaKnown RBP eCLIP17.2■□□□□ 0.34
CNKSR1-202ENST00000374253 HNRNPH2P55795 449 aaKnown RBP17.2■□□□□ 0.34
CNKSR1-202ENST00000374253 SNRPFP62306 86 aaKnown RBP17.2■□□□□ 0.34
CNKSR1-202ENST00000374253 GPC5P78333 572 aa17.2■□□□□ 0.34
CNKSR1-202ENST00000374253 BRDTQ58F21 947 aaPredicted RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms