RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 KITP10721 976 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 KCNH2Q12809 1159 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 WDR93Q6P2C0 686 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 RAVER2Q9HCJ3 691 aaKnown RBP12.22□□□□□ -0.45
VPS39-201ENST00000318006 MYO5BQ9ULV0 1848 aa12.22□□□□□ -0.45
VPS39-201ENST00000318006 ZBED1O96006 694 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 MARK3P27448 753 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 FXR1P51114 621 aaKnown RBP eCLIP12.21□□□□□ -0.45
VPS39-201ENST00000318006 DAB2IPQ5VWQ8 1189 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 OLFML2BQ68BL8 750 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 SLFN12LQ6IEE8 588 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 FBXO33Q7Z6M2 555 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 TRIM59Q8IWR1 403 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 MCPH1Q8NEM0 835 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 VCPKMTQ9H867 229 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 CYP4F11Q9HBI6 524 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 MTMR4Q9NYA4 1195 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 NXF1Q9UBU9 619 aaKnown RBP12.21□□□□□ -0.45
VPS39-201ENST00000318006 TUBE1Q9UJT0 475 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 L1RE1Q9UN81 338 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 SMG5Q9UPR3 1016 aaKnown RBP12.21□□□□□ -0.45
VPS39-201ENST00000318006 POTEFA5A3E0 1075 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 KPNA7A9QM74 516 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 POTEIP0CG38 1075 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 KCNA4P22459 653 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 SURF1Q15526 300 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 DNAL1Q4LDG9 190 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 SLC44A4Q53GD3 710 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 NAIF1Q69YI7 327 aaPredicted RBP12.21□□□□□ -0.45
VPS39-201ENST00000318006 POTEGQ6S5H5 508 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 POTEEQ6S8J3 1075 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 REXO1L1PQ8IX06 675 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 TTC13Q8NBP0 860 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 ERP27Q96DN0 273 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 PNKPQ96T60 521 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 FLT1P17948 1338 aa12.21□□□□□ -0.45
VPS39-201ENST00000318006 FDPSP14324 419 aaKnown RBP12.21□□□□□ -0.46
VPS39-201ENST00000318006 FGFR4P22455 802 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 KRT76Q01546 638 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 SLC20A2Q08357 652 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 KCNB1Q14721 858 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 NCAPHQ15003 741 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 CNGA3Q16281 694 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 KNOP1Q1ED39 458 aaKnown RBP12.21□□□□□ -0.46
VPS39-201ENST00000318006 KIAA1755Q5JYT7 1200 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 KIF2BQ8N4N8 673 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 CCSER1Q9C0I3 900 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 LZTS1Q9Y250 596 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 FAM205CA6NFA0 338 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 ACADSP16219 412 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 BARGINQ6ZT62 677 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 ZBTB33Q86T24 672 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 PRPF38AQ8NAV1 312 aaKnown RBP12.21□□□□□ -0.46
VPS39-201ENST00000318006 XXYLT1Q8NBI6 393 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 FBXL13Q8NEE6 735 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 MYCBPAPQ8TBZ2 947 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 RFFLQ8WZ73 363 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 RPS6KC1Q96S38 1066 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 HEMGNQ9BXL5 484 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 RBM12Q9NTZ6 932 aaKnown RBP12.21□□□□□ -0.46
VPS39-201ENST00000318006 HOXC10Q9NYD6 342 aa12.21□□□□□ -0.46
VPS39-201ENST00000318006 CCNYQ8ND76 341 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 FAF2Q96CS3 445 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 MSTO1Q9BUK6 570 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 NBPF3Q9H094 633 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 KLC2Q9H0B6 622 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 WNT8AQ9H1J5 351 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 ZHX2Q9Y6X8 837 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 FOXP2O15409 715 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 VHLP40337 213 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 FMR1Q06787 632 aaKnown RBP eCLIP12.2□□□□□ -0.46
VPS39-201ENST00000318006 ITKQ08881 620 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 IFRD2Q12894 506 aaPredicted RBP12.2□□□□□ -0.46
VPS39-201ENST00000318006 HP1BP3Q5SSJ5 553 aaPredicted RBP12.2□□□□□ -0.46
VPS39-201ENST00000318006 SUGP1Q8IWZ8 645 aaKnown RBP12.2□□□□□ -0.46
VPS39-201ENST00000318006 ATP11CQ8NB49 1132 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 MS4A14Q96JA4 679 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 WRNIP1Q96S55 665 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 SEL1LQ9UBV2 794 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 FBXO40Q9UH90 709 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 NCOA3Q9Y6Q9 1424 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 GOLGA8CPA6NN73 597 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 MED7O43513 233 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 CDH16O75309 829 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 PDIA5Q14554 519 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 CYTH1Q15438 398 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 OR2W6PQ8NHA6 318 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 AP5M1Q9H0R1 490 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 TSC22D4Q9Y3Q8 395 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 PFASO15067 1338 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 SNUPNO95149 360 aaKnown RBP12.2□□□□□ -0.46
VPS39-201ENST00000318006 CTDNEP1O95476 244 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 SRGAP2CP0DJJ0 459 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 ARL4AP40617 200 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 COPS2P61201 443 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 ZNF543Q08ER8 600 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 STXBP2Q15833 593 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 NAALADL2Q58DX5 795 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 TRIM67Q6ZTA4 783 aa12.2□□□□□ -0.46
VPS39-201ENST00000318006 NSUN6Q8TEA1 469 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms