RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 PLA2G12BQ9BX93 195 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 TPX2Q9ULW0 747 aaKnown RBP18.34■□□□□ 0.53
SHANK1-201ENST00000293441 KDM6AO15550 1401 aaPredicted RBP18.34■□□□□ 0.53
SHANK1-201ENST00000293441 ZC3H4Q9UPT8 1303 aaKnown RBP18.34■□□□□ 0.53
SHANK1-201ENST00000293441 CYP26A1O43174 497 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 GRIN3BO60391 1043 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 SLC7A5P2Q9GIP4 190 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 DRC3Q9H069 523 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 ARHGDIAP52565 204 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 RBBP7Q16576 425 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 ITPRIPL1Q6GPH6 555 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 NFRKBQ6P4R8 1299 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 EPM2AIP1Q7L775 607 aaPredicted RBP18.34■□□□□ 0.53
SHANK1-201ENST00000293441 MYOZ2Q9NPC6 264 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 KPNA7A9QM74 516 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 HMGB1P1B2RPK0 211 aaPredicted RBP18.34■□□□□ 0.53
SHANK1-201ENST00000293441 RASIP1Q5U651 963 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 SHC4Q6S5L8 630 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 GUF1Q8N442 669 aaKnown RBP18.34■□□□□ 0.53
SHANK1-201ENST00000293441 OR6P1Q8NGX9 317 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 TRIM15Q9C019 465 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 HMBSP08397 361 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 RHOT1Q8IXI2 618 aa18.34■□□□□ 0.53
SHANK1-201ENST00000293441 SPATA31A6Q5VVP1 1343 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 FRMD3A2A2Y4 597 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 CCDC151A5D8V7 595 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 APOL1O14791 398 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 TRAPPC3O43617 180 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 LBRQ14739 615 aaKnown RBP18.33■□□□□ 0.53
SHANK1-201ENST00000293441 CDKL3Q8IVW4 592 aaPredicted RBP18.33■□□□□ 0.53
SHANK1-201ENST00000293441 CCNYL1Q8N7R7 359 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 TRIM62Q9BVG3 475 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 PITPNM3Q9BZ71 974 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 WDR72Q3MJ13 1102 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 ZC3H18Q86VM9 953 aaKnown RBP18.33■□□□□ 0.53
SHANK1-201ENST00000293441 GLYCTKQ8IVS8 523 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 ITM2BQ9Y287 266 aa18.33■□□□□ 0.53
SHANK1-201ENST00000293441 CLCN6P51797 869 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 RAD51Q06609 339 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 KLHL38Q2WGJ6 581 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 ANKRD40Q6AI12 368 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 WDR75Q8IWA0 830 aaKnown RBP18.33■□□□□ 0.52
SHANK1-201ENST00000293441 UPF3AQ9H1J1 476 aaKnown RBP18.33■□□□□ 0.52
SHANK1-201ENST00000293441 WNT8AQ9H1J5 351 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 HSPBP1Q9NZL4 362 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 PPARGC1AQ9UBK2 798 aaKnown RBP18.33■□□□□ 0.52
SHANK1-201ENST00000293441 KCNA4P22459 653 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 ATICP31939 592 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 FRMD5Q7Z6J6 570 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 TRIM59Q8IWR1 403 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 PGBD4Q96DM1 585 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 TMEM39BQ9GZU3 492 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 SNX9Q9Y5X1 595 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 KRT14P02533 472 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 TRIM28Q13263 835 aaKnown RBP18.33■□□□□ 0.52
SHANK1-201ENST00000293441 SF3B3Q15393 1217 aaKnown RBP18.33■□□□□ 0.52
SHANK1-201ENST00000293441 TKFCQ3LXA3 575 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 ZNF34Q8IZ26 560 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 HIPK4Q8NE63 616 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 BPIFA3Q9BQP9 254 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 PLEKHA5Q9HAU0 1116 aa18.33■□□□□ 0.52
SHANK1-201ENST00000293441 LUC7L3O95232 432 aaKnown RBP18.32■□□□□ 0.52
SHANK1-201ENST00000293441 TMEM132DQ14C87 1099 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 XKR3Q5GH77 459 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 ACAD11Q709F0 780 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 GSPT2Q8IYD1 628 aaKnown RBP18.32■□□□□ 0.52
SHANK1-201ENST00000293441 DDX50Q9BQ39 737 aaKnown RBP18.32■□□□□ 0.52
SHANK1-201ENST00000293441 ELAC2Q9BQ52 826 aaKnown RBP18.32■□□□□ 0.52
SHANK1-201ENST00000293441 TSPYL2Q9H2G4 693 aaPredicted RBP18.32■□□□□ 0.52
SHANK1-201ENST00000293441 KLHL11Q9NVR0 708 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 PRR12Q9ULL5 1215 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 L3MBTL1Q9Y468 752 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 CCL15-CCL14A0A0B4J2E2 113 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 CTIFO43310 598 aaKnown RBP18.32■□□□□ 0.52
SHANK1-201ENST00000293441 TMCC1O94876 653 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 CYBBP04839 570 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 CCL15Q16663 113 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 PIP4K2CQ8TBX8 421 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 TEX33O43247 280 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 IRF1P10914 325 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 RGS7P49802 495 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 C1orf167Q5SNV9 1468 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 CELF2O95319 508 aaKnown RBP18.32■□□□□ 0.52
SHANK1-201ENST00000293441 CAV1Q03135 178 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 PDIA2Q13087 525 aaKnown RBP18.32■□□□□ 0.52
SHANK1-201ENST00000293441 E2F5Q15329 346 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 STOX1Q6ZVD7 989 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 ATP9BO43861 1147 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 DPEP1P16444 411 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 MAP2K2P36507 400 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 TPI1P60174 286 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 THEMIS2Q5TEJ8 643 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 IER5Q5VY09 327 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 C1orf54Q8WWF1 131 aa18.32■□□□□ 0.52
SHANK1-201ENST00000293441 ENTPD3O75355 529 aa18.31■□□□□ 0.52
SHANK1-201ENST00000293441 PMS2P54278 862 aa18.31■□□□□ 0.52
SHANK1-201ENST00000293441 SARM1Q6SZW1 724 aa18.31■□□□□ 0.52
SHANK1-201ENST00000293441 OSBPL9Q96SU4 736 aa18.31■□□□□ 0.52
SHANK1-201ENST00000293441 SLC13A1Q9BZW2 595 aa18.31■□□□□ 0.52
SHANK1-201ENST00000293441 FAF1Q9UNN5 650 aaPredicted RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms