RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 FGD2Q7Z6J4 655 aa11.73□□□□□ -0.53
MSH6-201ENST00000234420 SMYD4Q8IYR2 804 aaPredicted RBP11.73□□□□□ -0.53
MSH6-201ENST00000234420 UBE2TQ9NPD8 197 aaPredicted RBP11.73□□□□□ -0.53
MSH6-201ENST00000234420 CCT3P49368 545 aaKnown RBP11.73□□□□□ -0.53
MSH6-201ENST00000234420 RAB42Q8N4Z0 105 aa11.73□□□□□ -0.53
MSH6-201ENST00000234420 NMD3Q96D46 503 aaKnown RBP11.73□□□□□ -0.53
MSH6-201ENST00000234420 LSG1Q9H089 658 aaKnown RBP11.73□□□□□ -0.53
MSH6-201ENST00000234420 SNX24Q9Y343 169 aa11.73□□□□□ -0.53
MSH6-201ENST00000234420 IPO5O00410 1097 aaKnown RBP11.72□□□□□ -0.53
MSH6-201ENST00000234420 PAPOLAP51003 745 aaKnown RBP11.72□□□□□ -0.53
MSH6-201ENST00000234420 SYDE2Q5VT97 1194 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PKN3Q6P5Z2 889 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 IP6K1Q92551 441 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 MSTO1Q9BUK6 570 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 SLC13A1Q9BZW2 595 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 IPPQ9Y573 584 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PCDHB9Q9Y5E1 797 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PCDHA13Q9Y5I0 950 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 GOLGA8RI6L899 631 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 CYBBP04839 570 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PTK2Q05397 1052 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 MEI1Q5TIA1 1274 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 ARMCX2Q7L311 632 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PRMT1Q99873 361 aaKnown RBP11.72□□□□□ -0.53
MSH6-201ENST00000234420 BCL2L14Q9BZR8 327 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 TEX14Q8IWB6 1497 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 TAC1P20366 129 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PEX3P56589 373 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 C11orf57Q6ZUT1 292 aaPredicted RBP11.72□□□□□ -0.53
MSH6-201ENST00000234420 KIF2BQ8N4N8 673 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 ULK4Q96C45 1275 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 CAAP1Q9H8G2 361 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 NUMA1Q14980 2115 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 TCP11X1B4DZS4 312 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 EYA2O00167 538 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 TOMM70O94826 608 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PSAPP07602 524 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PRR29P0C7W0 189 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 BRAFP15056 766 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PPARGP37231 505 aaPredicted RBP11.72□□□□□ -0.53
MSH6-201ENST00000234420 PWP1Q13610 501 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PLEKHA7Q6IQ23 1121 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 SUCLG2Q96I99 432 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 FHDC1Q9C0D6 1143 aaPredicted RBP11.72□□□□□ -0.53
MSH6-201ENST00000234420 ZFYVE28Q9HCC9 887 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 RNF14Q9UBS8 474 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 USP17L8P0C7I0 530 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 FAM81BQ96LP2 452 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 NGRNQ9NPE2 291 aaKnown RBP11.72□□□□□ -0.53
MSH6-201ENST00000234420 TJP2Q9UDY2 1190 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PCDHA5Q9Y5H7 936 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 ITIH6Q6UXX5 1313 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 ZCCHC18P0CG32 403 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 CCND1P24385 295 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 NDUFA5Q16718 116 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 CCNYL1Q8N7R7 359 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PIGOQ8TEQ8 1089 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 L3MBTL3Q96JM7 780 aaPredicted RBP11.72□□□□□ -0.53
MSH6-201ENST00000234420 GREM2Q9H772 168 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 PAPOLBQ9NRJ5 636 aaKnown RBP11.72□□□□□ -0.53
MSH6-201ENST00000234420 KLHL20Q9Y2M5 609 aa11.72□□□□□ -0.53
MSH6-201ENST00000234420 CCDC78A2IDD5 438 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 COPS2P61201 443 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 TRIP10Q15642 601 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 CDC37Q16543 378 aaPredicted RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 OR8H2Q8N162 312 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 VPS11Q9H270 941 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 LSM1O15116 133 aaKnown RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 TRIM49P0CI25 452 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 TRIM49CP0CI26 452 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 TAF1BQ53T94 588 aaPredicted RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 MIIPQ5JXC2 388 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 PDIK1LQ8N165 341 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 DHX36Q9H2U1 1008 aaKnown RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 ALG13Q9NP73 1137 aaKnown RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 SEC31BQ9NQW1 1179 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 IGF1RP08069 1367 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 IQGAP2Q13576 1575 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 KRT37O76014 449 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 SEMA3DO95025 777 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 HSPA1AP0DMV8 641 aaKnown RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 HSPA1BP0DMV9 641 aaKnown RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 PAMP19021 973 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 ZNF568Q3ZCX4 644 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 LMBRD2Q68DH5 695 aaPredicted RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 SNRNP48Q6IEG0 339 aaKnown RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 ANKS3Q6ZW76 656 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 APPBP2Q92624 585 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 ATP8A2Q9NTI2 1148 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 PCDHA7Q9UN72 937 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 IBTKQ9P2D0 1353 aaPredicted RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 MAGI1Q96QZ7 1491 aaPredicted RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 ALDH1A2O94788 518 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 PSMC6P62333 389 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 LAMC2Q13753 1193 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 DPCR1Q3MIW9 517 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 SPATA2LQ8IUW3 424 aaPredicted RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 RTKN2Q8IZC4 609 aa11.71□□□□□ -0.53
MSH6-201ENST00000234420 ZNF473Q8WTR7 871 aaKnown RBP11.71□□□□□ -0.53
MSH6-201ENST00000234420 CUEDC2Q9H467 287 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms