RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 PIK3CAP42336 1068 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 HDAC4P56524 1084 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 DR1Q01658 176 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 LRP8Q14114 963 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 LIN9Q5TKA1 542 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 NSMFQ6X4W1 530 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 CEP128Q6ZU80 1094 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 RHOT2Q8IXI1 618 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 HELQQ8TDG4 1101 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 ATP6V1G3Q96LB4 118 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 EIF2AK1Q9BQI3 630 aaKnown RBP11.15□□□□□ -0.63
LIG1-220ENST00000601091 VCPKMTQ9H867 229 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 MAFFQ9ULX9 164 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 EYA4O95677 639 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 DRAP1Q14919 205 aaPredicted RBP11.14□□□□□ -0.63
LIG1-220ENST00000601091 ZFPM2Q8WW38 1151 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 ACCSQ96QU6 501 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 REEP2Q9BRK0 252 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 SEPT10Q9P0V9 454 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 EIF3HO15372 352 aaKnown RBP eCLIP11.14□□□□□ -0.63
LIG1-220ENST00000601091 ANXA13P27216 316 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 RPA1P27694 616 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 PTK2Q05397 1052 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 VPS72Q15906 364 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 XKR9Q5GH70 373 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 FAM102BQ5T8I3 360 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 RBM46Q8TBY0 533 aaKnown RBP11.14□□□□□ -0.63
LIG1-220ENST00000601091 CYP1A2P05177 515 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 HNRNPCP07910 306 aaKnown RBP eCLIP11.14□□□□□ -0.63
LIG1-220ENST00000601091 HSPA8P11142 646 aaKnown RBP11.14□□□□□ -0.63
LIG1-220ENST00000601091 ALAS1P13196 640 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 MFAP3P55082 362 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 GJC2Q5T442 439 aaPredicted RBP11.14□□□□□ -0.63
LIG1-220ENST00000601091 GLYCTKQ8IVS8 523 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 LARGE2Q8N3Y3 721 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 RUNDC3BQ96NL0 473 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 ZIM3Q96PE6 472 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 SLITRK6Q9H5Y7 841 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 SLC5A4Q9NY91 659 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 NYAP2Q9P242 653 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 DKK3Q9UBP4 350 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 CCPG1Q9ULG6 757 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 NOC2LQ9Y3T9 749 aaKnown RBP11.14□□□□□ -0.63
LIG1-220ENST00000601091 PASKQ96RG2 1323 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 C5P01031 1676 aa11.14□□□□□ -0.63
LIG1-220ENST00000601091 GNAT1P11488 350 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 PDE6CP51160 858 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 CDC42EP5Q6NZY7 148 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 DPH6Q7L8W6 267 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 MCF2L2Q86YR7 1114 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 CREG2Q8IUH2 290 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 MFN1Q8IWA4 741 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 FLAD1Q8NFF5 587 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 HOOK2Q96ED9 719 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 DYDC2Q96IM9 177 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 MTMR9Q96QG7 549 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 CNOT10Q9H9A5 744 aaKnown RBP11.13□□□□□ -0.63
LIG1-220ENST00000601091 SYF2O95926 243 aaKnown RBP11.13□□□□□ -0.63
LIG1-220ENST00000601091 SEC24CP53992 1094 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 GUCY1A3Q02108 690 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 MIIPQ5JXC2 388 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 BRSK2Q8IWQ3 736 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 ARHGAP18Q8N392 663 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 USP38Q8NB14 1042 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 MTMR8Q96EF0 704 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 NUDT12Q9BQG2 462 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 INTS9Q9NV88 658 aaKnown RBP11.13□□□□□ -0.63
LIG1-220ENST00000601091 AMACRQ9UHK6 382 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 SIK3Q9Y2K2 1263 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 RGPD5Q99666 1765 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 RCCD1A6NED2 376 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 CTNND1O60716 968 aaKnown RBP11.13□□□□□ -0.63
LIG1-220ENST00000601091 MTRF1O75570 445 aaKnown RBP11.13□□□□□ -0.63
LIG1-220ENST00000601091 FUT4P22083 530 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 FECHP22830 423 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 AARSP49588 968 aaKnown RBP eCLIP11.13□□□□□ -0.632e-6■■■■□ 24
LIG1-220ENST00000601091 MXI1P50539 228 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 PPP2R5CQ13362 524 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 KLHDC7AQ5VTJ3 777 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 HHIPL2Q6UWX4 724 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 INTS8Q75QN2 995 aaKnown RBP11.13□□□□□ -0.63
LIG1-220ENST00000601091 NLRX1Q86UT6 975 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 CATSPER3Q86XQ3 398 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 HS6ST3Q8IZP7 471 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 CNKSR1Q969H4 720 aa11.13□□□□□ -0.63
LIG1-220ENST00000601091 FAM163AQ96GL9 167 aaPredicted RBP11.13□□□□□ -0.63
LIG1-220ENST00000601091 MIF4GDA9UHW6 222 aaKnown RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 PDE2AO00408 941 aaPredicted RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 SLC16A3O15427 465 aaKnown RBP11.12□□□□□ -0.63
LIG1-220ENST00000601091 LGR5O75473 907 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 SOX5P35711 763 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 PRELPP51888 382 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 KRT27Q7Z3Y8 459 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 KSR1Q8IVT5 923 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 TRIM59Q8IWR1 403 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 SEPT12Q8IYM1 358 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 RFFLQ8WZ73 363 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 ARL8AQ96BM9 186 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 PPCSQ9HAB8 311 aa11.12□□□□□ -0.63
LIG1-220ENST00000601091 WDR37Q9Y2I8 494 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 144.2 ms