RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 SASS6Q6UVJ0 657 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 ZBTB8OSQ8IWT0 167 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 TMEM161BQ8NDZ6 487 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 CCDC47Q96A33 483 aaKnown RBP16.48■□□□□ 0.23
TRIM28-207ENST00000597136 ZBED2Q9BTP6 218 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 C2orf40Q9H1Z8 148 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 C17orf75Q9HAS0 396 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 PARVGQ9HBI0 331 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 CHST12Q9NRB3 414 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 MEIS3P2A8K0S8 358 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 PRKCBP05771 671 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 GAP43P17677 238 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 BMP6P22004 513 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 HERC4Q5GLZ8 1057 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-207ENST00000597136 SPRED2Q7Z698 418 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 SFR1Q86XK3 245 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 ECHDC2Q86YB7 292 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 TRIML1Q8N9V2 468 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 SPIRE2Q8WWL2 714 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 FUCA2Q9BTY2 467 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 EIF2AQ9BY44 585 aaKnown RBP16.47■□□□□ 0.23
TRIM28-207ENST00000597136 PRMT7Q9NVM4 692 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-207ENST00000597136 TBC1D7Q9P0N9 293 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 LARSQ9P2J5 1176 aaKnown RBP16.47■□□□□ 0.23
TRIM28-207ENST00000597136 ACKR2O00590 384 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 TLL1O43897 1013 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 CCDC192P0DO97 292 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 ATF7P17544 494 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-207ENST00000597136 DNAJB2P25686 324 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 NCKAP1LP55160 1127 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 NLRP12P59046 1061 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 ZNF445P59923 1031 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 TYRO3Q06418 890 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 MAPK6Q16659 721 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 FAM187BQ17R55 369 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 ZC2HC1CQ53FD0 456 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-207ENST00000597136 EEF1DP3Q658K8 133 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 PPP4R3CPQ6ZMV5 832 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 HAUS6Q7Z4H7 955 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 LPPQ93052 612 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 HPS3Q969F9 1004 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 FGFBP2Q9BYJ0 223 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 NKX2-4Q9H2Z4 354 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 C1orf112Q9NSG2 853 aa16.47■□□□□ 0.23
TRIM28-207ENST00000597136 PRRC2BQ5JSZ5 2229 aaKnown RBP16.46■□□□□ 0.23
TRIM28-207ENST00000597136 A0A0U1RQF3 1178 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 A0A1B0GUA9 196 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 MAPTP10636 758 aaKnown RBP16.46■□□□□ 0.23
TRIM28-207ENST00000597136 FGFR1P11362 822 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 EFNA5P52803 228 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 SMTNP53814 917 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 HTRA4P83105 476 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-207ENST00000597136 PSMD2Q13200 908 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 PRPF4BQ13523 1007 aaKnown RBP16.46■□□□□ 0.23
TRIM28-207ENST00000597136 ZNF658Q5TYW1 1059 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-207ENST00000597136 ZNF598Q86UK7 904 aaKnown RBP16.46■□□□□ 0.23
TRIM28-207ENST00000597136 NPAS4Q8IUM7 802 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 RNF169Q8NCN4 708 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 RAD9AQ99638 391 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 TMEM134Q9H6X4 195 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 FAM105AQ9NUU6 356 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 RNF19AQ9NV58 838 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 SEL1LQ9UBV2 794 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 PCDHB7Q9Y5E2 793 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 PCDHA11Q9Y5I1 949 aa16.46■□□□□ 0.23
TRIM28-207ENST00000597136 DGKIO75912 1065 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 CA3P07451 260 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 STK4Q13043 487 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 PCBP1Q15365 356 aaKnown RBP eCLIP16.45■□□□□ 0.228e-11■■■■■ 28.4
TRIM28-207ENST00000597136 STX1AQ16623 288 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 FAM26FQ5R3K3 315 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 LRSAM1Q6UWE0 723 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 SMG8Q8ND04 991 aaKnown RBP16.45■□□□□ 0.22
TRIM28-207ENST00000597136 ZNF689Q96CS4 500 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-207ENST00000597136 ZBTB45Q96K62 511 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-207ENST00000597136 PRIMPOLQ96LW4 560 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 TARS2Q9BW92 718 aaKnown RBP16.45■□□□□ 0.22
TRIM28-207ENST00000597136 TRAIPQ9BWF2 469 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 GTPBP4Q9BZE4 634 aaKnown RBP16.45■□□□□ 0.22
TRIM28-207ENST00000597136 RNF39Q9H2S5 420 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 IKZF4Q9H2S9 585 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 PDZD7Q9H5P4 517 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 SLC39A2Q9NP94 309 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 OLFML3Q9NRN5 406 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 MSRAQ9UJ68 235 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 LRFN2Q9ULH4 789 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 HES2Q9Y543 173 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 PCDHB2Q9Y5E7 798 aa16.45■□□□□ 0.22
TRIM28-207ENST00000597136 CNTNAP2Q9UHC6 1331 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 AXLP30530 894 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 CASP5P51878 434 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 DPCR1Q3MIW9 517 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 NOTUMQ6P988 496 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 ZNF720Q7Z2F6 126 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 FAM178BQ8IXR5 827 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 SMYD4Q8IYR2 804 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-207ENST00000597136 GLIS3Q8NEA6 775 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 ACO2Q99798 780 aaKnown RBP16.44■□□□□ 0.22
TRIM28-207ENST00000597136 RC3H2Q9HBD1 1191 aaKnown RBP16.44■□□□□ 0.22
TRIM28-207ENST00000597136 ANO10Q9NW15 660 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms