RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 SPATA32Q96LK8 384 aa19.02■□□□□ 0.64
SHKBP1-212ENST00000596163 EIF2AQ9BY44 585 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-212ENST00000596163 MRPL4Q9BYD3 311 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-212ENST00000596163 SCAND2PQ9GZW5 306 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-212ENST00000596163 MTCH2Q9Y6C9 303 aa19.02■□□□□ 0.64
SHKBP1-212ENST00000596163 SLC16A4O15374 487 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 LPXNO60711 386 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 OFD1O75665 1012 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 LINC00271P0C7V0 271 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 AMPD3Q01432 767 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 CACNB1Q02641 598 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 RNASELQ05823 741 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 DCAF4L1Q3SXM0 396 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 LONRF3Q496Y0 759 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 AXDND1Q5T1B0 1012 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 AGMOQ6ZNB7 445 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 PDILTQ8N807 584 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 SMG8Q8ND04 991 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 ZNF558Q96NG5 402 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 ZHX3Q9H4I2 956 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 CWH43Q9H720 699 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 GIT1Q9Y2X7 761 aa19.01■□□□□ 0.63
SHKBP1-212ENST00000596163 TRAK2O60296 914 aa19■□□□□ 0.63
SHKBP1-212ENST00000596163 PPM1AP35813 382 aa19■□□□□ 0.63
SHKBP1-212ENST00000596163 ZNF131P52739 623 aa19■□□□□ 0.63
SHKBP1-212ENST00000596163 ATF7IP2Q5U623 682 aa19■□□□□ 0.63
SHKBP1-212ENST00000596163 SHC4Q6S5L8 630 aa19■□□□□ 0.63
SHKBP1-212ENST00000596163 COLGALT1Q8NBJ5 622 aa19■□□□□ 0.63
SHKBP1-212ENST00000596163 TMEM161BQ8NDZ6 487 aa19■□□□□ 0.63
SHKBP1-212ENST00000596163 MRPL38Q96DV4 380 aaKnown RBP19■□□□□ 0.63
SHKBP1-212ENST00000596163 PDZD7Q9H5P4 517 aa19■□□□□ 0.63
SHKBP1-212ENST00000596163 TNFSF13BQ9Y275 285 aa19■□□□□ 0.63
SHKBP1-212ENST00000596163 INPP5FQ9Y2H2 1132 aa19■□□□□ 0.63
SHKBP1-212ENST00000596163 GAP43P17677 238 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 ANP32AP39687 249 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 ALDH7A1P49419 539 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 NCKAP1LP55160 1127 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 UBE3AQ05086 875 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 NT5DC1Q5TFE4 455 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 RESP18Q5W5W9 173 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 LRRC55Q6ZSA7 311 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 HAUS6Q7Z4H7 955 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 CDR2LQ86X02 465 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 THNSL1Q8IYQ7 743 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 MICALL1Q8N3F8 863 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 KLHL23Q8NBE8 558 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 LEO1Q8WVC0 666 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 PPM1EQ8WY54 764 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 DDX12PQ92771 950 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 KCNN1Q92952 543 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 FAM193BQ96PV7 902 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 APOL6Q9BWW8 343 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 PARP2Q9UGN5 583 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 PUF60Q9UHX1 559 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 PLAGL2Q9UPG8 496 aa18.99■□□□□ 0.63
SHKBP1-212ENST00000596163 MAPTP10636 758 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 KRT17Q04695 432 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 TIGD5Q53EQ6 642 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 ADALQ6DHV7 355 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 KCNT2Q6UVM3 1135 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 DYMQ7RTS9 669 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 FAM178BQ8IXR5 827 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 DHX58Q96C10 678 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 ACO2Q99798 780 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 TCHPQ9BT92 498 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 TNMDQ9H2S6 317 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 MAGEF1Q9HAY2 307 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 TBC1D13Q9NVG8 400 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 SPG21Q9NZD8 308 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 SEL1LQ9UBV2 794 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 CHD9Q3L8U1 2897 aa18.98■□□□□ 0.63
SHKBP1-212ENST00000596163 ZMYM2Q9UBW7 1377 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 A0A087X0B3 334 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 TTLL13PA6NNM8 815 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 MEIS3P2A8K0S8 358 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 K7ENM7 598 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 INPPL1O15357 1258 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 ITGB1P05556 798 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 CCDC85BQ15834 202 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 ZPBP2Q6X784 338 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 SPPL3Q8TCT6 385 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 TARS2Q9BW92 718 aaKnown RBP18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 RNF39Q9H2S5 420 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 NXF3Q9H4D5 531 aaKnown RBP18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 ALG13Q9NP73 1137 aaKnown RBP18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 HES2Q9Y543 173 aa18.97■□□□□ 0.63
SHKBP1-212ENST00000596163 ARL5CA6NH57 179 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 MYMKA6NI61 221 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 GRM6O15303 877 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 POLR2DO15514 142 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 NR1I2O75469 434 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 FGF18O76093 207 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 ALDH2P05091 517 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 CMA1P23946 247 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 AKAP5P24588 427 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 PLCB3Q01970 1234 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 E2F4Q16254 413 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 EEF1DP3Q658K8 133 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 TAS1R3Q7RTX0 852 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 CCDC65Q8IXS2 484 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms