RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 CCDC62Q6P9F0 684 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 KCNV1Q6PIU1 500 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 METTL7BQ6UX53 244 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 CYFIP1Q7L576 1253 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 MAP4K3Q8IVH8 894 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 KSR1Q8IVT5 923 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 FAM186BQ8IYM0 893 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 TMEM199Q8N511 208 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 CCDC155Q8N6L0 562 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 SLC43A3Q8NBI5 491 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 TMEM161BQ8NDZ6 487 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 BSNDQ8WZ55 320 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 CEP170P1Q96L14 293 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 RNPC3Q96LT9 517 aaKnown RBP10.28□□□□□ -0.76
VPS25-205ENST00000590339 ACCSQ96QU6 501 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 CHP1Q99653 195 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 MTG1Q9BT17 334 aaPredicted RBP10.28□□□□□ -0.76
VPS25-205ENST00000590339 LSM14BQ9BX40 385 aaKnown RBP10.28□□□□□ -0.76
VPS25-205ENST00000590339 HIPK3Q9H422 1215 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 TMEM206Q9H813 350 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 ATP6V0A4Q9HBG4 840 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 PLCB1Q9NQ66 1216 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 GPRC5CQ9NQ84 441 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 ZNF302Q9NR11 478 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 CYP26B1Q9NR63 512 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 TRMT13Q9NUP7 481 aaKnown RBP10.28□□□□□ -0.76
VPS25-205ENST00000590339 SEPT9Q9UHD8 586 aaPredicted RBP10.28□□□□□ -0.76
VPS25-205ENST00000590339 DDX41Q9UJV9 622 aaKnown RBP10.28□□□□□ -0.76
VPS25-205ENST00000590339 PLAGL2Q9UPG8 496 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 REXO2Q9Y3B8 237 aaKnown RBP10.28□□□□□ -0.76
VPS25-205ENST00000590339 PPME1Q9Y570 386 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 PAXBP1Q9Y5B6 917 aa10.28□□□□□ -0.76
VPS25-205ENST00000590339 A6NJR5 290 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 FANCGO15287 622 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 LGR5O75473 907 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 NDUFA10O95299 355 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 GGPS1O95749 300 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 EMC2Q15006 297 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 PPP2R5AQ15172 486 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 TARBP2Q15633 366 aaKnown RBP10.27□□□□□ -0.77
VPS25-205ENST00000590339 FAM102BQ5T8I3 360 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 ZNF662Q6ZS27 426 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 HAUS6Q7Z4H7 955 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 DHX37Q8IY37 1157 aaKnown RBP10.27□□□□□ -0.77
VPS25-205ENST00000590339 ACRBPQ8NEB7 543 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 ZNF397Q8NF99 534 aaPredicted RBP10.27□□□□□ -0.77
VPS25-205ENST00000590339 NEK11Q8NG66 645 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 SYN2Q92777 582 aaPredicted RBP10.27□□□□□ -0.77
VPS25-205ENST00000590339 PCMTD1Q96MG8 357 aaPredicted RBP10.27□□□□□ -0.77
VPS25-205ENST00000590339 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.27□□□□□ -0.771e-6■□□□□ 10.5
VPS25-205ENST00000590339 SH2D3AQ9BRG2 576 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 NTPCRQ9BSD7 190 aaKnown RBP10.27□□□□□ -0.77
VPS25-205ENST00000590339 NIFKQ9BYG3 293 aaKnown RBP10.27□□□□□ -0.77
VPS25-205ENST00000590339 DHX33Q9H6R0 707 aaKnown RBP10.27□□□□□ -0.77
VPS25-205ENST00000590339 FAM207AQ9NSI2 230 aaPredicted RBP10.27□□□□□ -0.77
VPS25-205ENST00000590339 FBXL5Q9UKA1 691 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 FRMPD3Q5JV73 1810 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 UMODL1Q5DID0 1318 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 EMSYQ7Z589 1322 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 ADGRA3Q8IWK6 1321 aa10.27□□□□□ -0.77
VPS25-205ENST00000590339 UQCRHLA0A096LP55 91 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 LRRC53A6NM62 1247 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 EIF3CLB5ME19 914 aaKnown RBP10.26□□□□□ -0.77
VPS25-205ENST00000590339 RIOK3O14730 519 aaKnown RBP10.26□□□□□ -0.77
VPS25-205ENST00000590339 SLC16A4O15374 487 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 KPNA6O60684 536 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 UQCRHP07919 91 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 SCP2P22307 547 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 ARHGAP25P42331 645 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 NPTX2P47972 431 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 PEX3P56589 373 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 SP4Q02446 784 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 ARHGAP1Q07960 439 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 DMP1Q13316 513 aaPredicted RBP10.26□□□□□ -0.77
VPS25-205ENST00000590339 PPIGQ13427 754 aaKnown RBP eCLIP10.26□□□□□ -0.779e-8■□□□□ 10.6
VPS25-205ENST00000590339 ZNF365Q70YC5 407 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 C16orf59Q7L2K0 433 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 MAEAQ7L5Y9 396 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 CCDC170Q8IYT3 715 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 KIF18AQ8NI77 898 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 EIF3CQ99613 913 aaKnown RBP10.26□□□□□ -0.77
VPS25-205ENST00000590339 POLR3FQ9H1D9 316 aaPredicted RBP10.26□□□□□ -0.77
VPS25-205ENST00000590339 NUCKS1Q9H1E3 243 aaKnown RBP10.26□□□□□ -0.77
VPS25-205ENST00000590339 MMRN2Q9H8L6 949 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 L2HGDHQ9H9P8 463 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 SIX2Q9NPC8 291 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 ARHGAP28Q9P2N2 729 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 MYO6Q9UM54 1294 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 NOD1Q9Y239 953 aa10.26□□□□□ -0.77
VPS25-205ENST00000590339 EPN1Q9Y6I3 576 aaPredicted RBP10.26□□□□□ -0.77
VPS25-205ENST00000590339 A0A0U1RQJ8 604 aa10.25□□□□□ -0.77
VPS25-205ENST00000590339 TISP43B9A030 160 aa10.25□□□□□ -0.77
VPS25-205ENST00000590339 LCA5LO95447 670 aa10.25□□□□□ -0.77
VPS25-205ENST00000590339 MMP3P08254 477 aa10.25□□□□□ -0.77
VPS25-205ENST00000590339 ABCD1P33897 745 aa10.25□□□□□ -0.77
VPS25-205ENST00000590339 CYLC1P35663 651 aaPredicted RBP10.25□□□□□ -0.77
VPS25-205ENST00000590339 RFC5P40937 340 aa10.25□□□□□ -0.77
VPS25-205ENST00000590339 CYP2J2P51589 502 aa10.25□□□□□ -0.77
VPS25-205ENST00000590339 BFSP1Q12934 665 aa10.25□□□□□ -0.77
VPS25-205ENST00000590339 MAPK8IP2Q13387 824 aaPredicted RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms