RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 LBX1P52954 281 aa33.38■■■□□ 2.93
CTCF-203ENST00000566078 PRPF4BQ13523 1007 aaKnown RBP33.38■■■□□ 2.93
CTCF-203ENST00000566078 SLFN12LQ6IEE8 588 aa33.38■■■□□ 2.93
CTCF-203ENST00000566078 BORCS6Q96GS4 357 aa33.38■■■□□ 2.93
CTCF-203ENST00000566078 ZBTB45Q96K62 511 aaPredicted RBP33.38■■■□□ 2.93
CTCF-203ENST00000566078 DEFB118Q96PH6 123 aa33.38■■■□□ 2.93
CTCF-203ENST00000566078 ACO2Q99798 780 aaKnown RBP33.38■■■□□ 2.93
CTCF-203ENST00000566078 RNF208Q9H0X6 261 aa33.38■■■□□ 2.93
CTCF-203ENST00000566078 GINS2Q9Y248 185 aa33.38■■■□□ 2.93
CTCF-203ENST00000566078 A0A1W2PQ45 241 aaPredicted RBP33.37■■■□□ 2.93
CTCF-203ENST00000566078 A0A1W2PQY0 241 aa33.37■■■□□ 2.93
CTCF-203ENST00000566078 CSDE1O75534 798 aaKnown RBP33.37■■■□□ 2.93
CTCF-203ENST00000566078 DCAF17Q5H9S7 520 aaPredicted RBP33.37■■■□□ 2.93
CTCF-203ENST00000566078 SRGAP1Q7Z6B7 1085 aa33.37■■■□□ 2.93
CTCF-203ENST00000566078 GOLGA6L6A8MZA4 724 aa33.36■■■□□ 2.93
CTCF-203ENST00000566078 B4GALT5O43286 388 aa33.36■■■□□ 2.93
CTCF-203ENST00000566078 HSPA1AP0DMV8 641 aaKnown RBP33.36■■■□□ 2.93
CTCF-203ENST00000566078 HSPA1BP0DMV9 641 aaKnown RBP33.36■■■□□ 2.93
CTCF-203ENST00000566078 PBX1P40424 430 aa33.36■■■□□ 2.93
CTCF-203ENST00000566078 FAM187BQ17R55 369 aa33.36■■■□□ 2.93
CTCF-203ENST00000566078 TMEM132AQ24JP5 1023 aa33.36■■■□□ 2.93
CTCF-203ENST00000566078 FKBP15Q5T1M5 1219 aa33.36■■■□□ 2.93
CTCF-203ENST00000566078 NME8Q8N427 588 aa33.36■■■□□ 2.93
CTCF-203ENST00000566078 GCOM2Q9BZD3 368 aaPredicted RBP33.36■■■□□ 2.93
CTCF-203ENST00000566078 FBXO46Q6PJ61 603 aaPredicted RBP33.35■■■□□ 2.93
CTCF-203ENST00000566078 GPD1LQ8N335 351 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 OSMRQ99650 979 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 HAPLN2Q9GZV7 340 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 PHF24Q9UPV7 400 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 MAPK13O15264 365 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 TOM1L1O75674 476 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 ANK1P16157 1881 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 CTCFP49711 727 aaPredicted RBP33.35■■■□□ 2.93
CTCF-203ENST00000566078 PPP2R3AQ06190 1150 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 SNRNP35Q16560 246 aaKnown RBP33.35■■■□□ 2.93
CTCF-203ENST00000566078 AMHR2Q16671 573 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 TCERG1LQ5VWI1 586 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 SPECC1LQ69YQ0 1117 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 SERINC5Q86VE9 423 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 PRIMPOLQ96LW4 560 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 MSTO1Q9BUK6 570 aa33.35■■■□□ 2.93
CTCF-203ENST00000566078 AGO2Q9UKV8 859 aaKnown RBP33.35■■■□□ 2.93
CTCF-203ENST00000566078 CNTNAP2Q9UHC6 1331 aa33.34■■■□□ 2.93
CTCF-203ENST00000566078 ADRB2P07550 413 aa33.34■■■□□ 2.93
CTCF-203ENST00000566078 PTPN11Q06124 597 aaPredicted RBP33.34■■■□□ 2.93
CTCF-203ENST00000566078 PTGISQ16647 500 aa33.34■■■□□ 2.93
CTCF-203ENST00000566078 ATF7IP2Q5U623 682 aa33.34■■■□□ 2.93
CTCF-203ENST00000566078 TSHZ1Q6ZSZ6 1077 aa33.34■■■□□ 2.93
CTCF-203ENST00000566078 CBWD2Q8IUF1 395 aa33.34■■■□□ 2.93
CTCF-203ENST00000566078 CDHR5Q9HBB8 845 aa33.34■■■□□ 2.93
CTCF-203ENST00000566078 STARD7Q9NQZ5 370 aa33.34■■■□□ 2.93
CTCF-203ENST00000566078 KIAA0391O15091 583 aaKnown RBP33.33■■■□□ 2.93
CTCF-203ENST00000566078 KRT13P13646 458 aa33.33■■■□□ 2.93
CTCF-203ENST00000566078 BFSP1Q12934 665 aa33.33■■■□□ 2.93
CTCF-203ENST00000566078 INTS8Q75QN2 995 aaKnown RBP33.33■■■□□ 2.93
CTCF-203ENST00000566078 SLC35C1Q96A29 364 aa33.33■■■□□ 2.93
CTCF-203ENST00000566078 FBXL18Q96ME1 805 aa33.33■■■□□ 2.93
CTCF-203ENST00000566078 FAM213AQ9BRX8 229 aa33.33■■■□□ 2.93
CTCF-203ENST00000566078 IMPACTQ9P2X3 320 aa33.33■■■□□ 2.93
CTCF-203ENST00000566078 A0A0B4J269 797 aa33.32■■■□□ 2.92
CTCF-203ENST00000566078 DNM1LO00429 736 aa33.32■■■□□ 2.92
CTCF-203ENST00000566078 CLDN3O15551 220 aa33.32■■■□□ 2.92
CTCF-203ENST00000566078 EXTL3O43909 919 aa33.32■■■□□ 2.92
CTCF-203ENST00000566078 ERLIN2O94905 339 aa33.32■■■□□ 2.92
CTCF-203ENST00000566078 HARSP12081 509 aaKnown RBP33.32■■■□□ 2.92
CTCF-203ENST00000566078 KCNH2Q12809 1159 aa33.32■■■□□ 2.92
CTCF-203ENST00000566078 ZBTB33Q86T24 672 aa33.32■■■□□ 2.92
CTCF-203ENST00000566078 TCHPQ9BT92 498 aa33.32■■■□□ 2.92
CTCF-203ENST00000566078 A0A1W2PQC6 194 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 AFPP02771 609 aaKnown RBP33.31■■■□□ 2.92
CTCF-203ENST00000566078 RSPH3Q86UC2 560 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 ZNF710Q8N1W2 664 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 WNT8BQ93098 351 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 ITIH6Q6UXX5 1313 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 A0A0U1RQG5 324 aaPredicted RBP33.31■■■□□ 2.92
CTCF-203ENST00000566078 DARSP14868 501 aaKnown RBP33.31■■■□□ 2.92
CTCF-203ENST00000566078 FGFR4P22455 802 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 PROZP22891 400 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 MRPS6P82932 125 aaKnown RBP33.31■■■□□ 2.92
CTCF-203ENST00000566078 MPZL3Q6UWV2 235 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 KIAA1586Q9HCI6 787 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 OGDHLQ9ULD0 1010 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 TNFSF13BQ9Y275 285 aa33.31■■■□□ 2.92
CTCF-203ENST00000566078 ABLIM1O14639 778 aa33.3■■■□□ 2.92
CTCF-203ENST00000566078 TSPAN1O60635 241 aa33.3■■■□□ 2.92
CTCF-203ENST00000566078 TRIM49P0CI25 452 aa33.3■■■□□ 2.92
CTCF-203ENST00000566078 TRIM49CP0CI26 452 aa33.3■■■□□ 2.92
CTCF-203ENST00000566078 NOLC1Q14978 699 aaKnown RBP eCLIP33.3■■■□□ 2.92
CTCF-203ENST00000566078 ZNF568Q3ZCX4 644 aa33.3■■■□□ 2.92
CTCF-203ENST00000566078 CCDC186Q7Z3E2 898 aa33.3■■■□□ 2.92
CTCF-203ENST00000566078 CPB2Q96IY4 423 aa33.3■■■□□ 2.92
CTCF-203ENST00000566078 ERGIC2Q96RQ1 377 aa33.3■■■□□ 2.92
CTCF-203ENST00000566078 TRMT13Q9NUP7 481 aaKnown RBP33.3■■■□□ 2.92
CTCF-203ENST00000566078 NOD1Q9Y239 953 aa33.3■■■□□ 2.92
CTCF-203ENST00000566078 M0QZ92 97 aa33.29■■■□□ 2.92
CTCF-203ENST00000566078 LDHAP00338 332 aaKnown RBP33.29■■■□□ 2.92
CTCF-203ENST00000566078 CRYBB1P53674 252 aaPredicted RBP33.29■■■□□ 2.92
CTCF-203ENST00000566078 MCL1Q07820 350 aa33.29■■■□□ 2.92
CTCF-203ENST00000566078 SYCP1Q15431 976 aa33.29■■■□□ 2.92
CTCF-203ENST00000566078 EEF1DP3Q658K8 133 aa33.29■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms