RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CDC42EP1Q00587 391 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 EHHADHQ08426 723 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 CUL4BQ13620 913 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 TFDP1Q14186 410 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ZNF697Q5TEC3 545 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ADALQ6DHV7 355 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 TWF2Q6IBS0 349 aaKnown RBP10.17□□□□□ -0.78
VPS35-206ENST00000565228 TMEM173Q86WV6 379 aaPredicted RBP10.17□□□□□ -0.78
VPS35-206ENST00000565228 SFR1Q86XK3 245 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ZNF280BQ86YH2 543 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ZNF710Q8N1W2 664 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 KCTD17Q8N5Z5 321 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 RNF169Q8NCN4 708 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ZSWIM2Q8NEG5 633 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 BCL7CQ8WUZ0 217 aaPredicted RBP10.17□□□□□ -0.78
VPS35-206ENST00000565228 SPIRE2Q8WWL2 714 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ARNTL2Q8WYA1 636 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 CLP1Q92989 425 aaKnown RBP10.17□□□□□ -0.78
VPS35-206ENST00000565228 SPATA32Q96LK8 384 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ZFP42Q96MM3 310 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 YME1L1Q96TA2 773 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ACO2Q99798 780 aaKnown RBP10.17□□□□□ -0.78
VPS35-206ENST00000565228 ZBED2Q9BTP6 218 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 TARS2Q9BW92 718 aaKnown RBP10.17□□□□□ -0.78
VPS35-206ENST00000565228 BLZF1Q9H2G9 400 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ELAC1Q9H777 363 aaKnown RBP10.17□□□□□ -0.78
VPS35-206ENST00000565228 TYW1Q9NV66 732 aaKnown RBP10.17□□□□□ -0.78
VPS35-206ENST00000565228 TBC1D7Q9P0N9 293 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 STK17AQ9UEE5 414 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 CFAP45Q9UL16 551 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 INSL6Q9Y581 213 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 PCDHB7Q9Y5E2 793 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 PCDHGC5Q9Y5F6 944 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 TTC28Q96AY4 2481 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 TDRD15B5MCY1 1934 aaKnown RBP10.17□□□□□ -0.78
VPS35-206ENST00000565228 ANKRD63C9JTQ0 380 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 ACKR2O00590 384 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 GRM6O15303 877 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 FAM189A1O60320 539 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 MYBP10242 640 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 ZSCAN20P17040 1043 aaPredicted RBP10.16□□□□□ -0.78
VPS35-206ENST00000565228 CMA1P23946 247 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 AKAP5P24588 427 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 STAT6P42226 847 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 NUCB2P80303 420 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 EPC2Q52LR7 807 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 SEZ6Q53EL9 994 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 ZBTB41Q5SVQ8 909 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 SCARA3Q6AZY7 606 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 ENGASEQ8NFI3 743 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 DEPTORQ8TB45 409 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 KCNN1Q92952 543 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 VN1R3Q9BXE9 311 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 TRIM9Q9C026 710 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 TMEM134Q9H6X4 195 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 SLC28A3Q9HAS3 691 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 KMT5AQ9NQR1 393 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 PRDM6Q9NQX0 595 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 DNAJB4Q9UDY4 337 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 CCDC39Q9UFE4 941 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 KCNH3Q9ULD8 1083 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 STXBP5LQ9Y2K9 1186 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 PDCD11Q14690 1871 aaKnown RBP10.16□□□□□ -0.78
VPS35-206ENST00000565228 XIRP2A4UGR9 3374 aa10.16□□□□□ -0.78
VPS35-206ENST00000565228 TMEM265A0A087WTH1 108 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.15□□□□□ -0.78
VPS35-206ENST00000565228 PTGESO14684 152 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 WNT7BP56706 349 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 PRPF4BQ13523 1007 aaKnown RBP10.15□□□□□ -0.78
VPS35-206ENST00000565228 SNW1Q13573 536 aaKnown RBP10.15□□□□□ -0.78
VPS35-206ENST00000565228 BTG3Q14201 252 aaPredicted RBP10.15□□□□□ -0.78
VPS35-206ENST00000565228 NAB2Q15742 525 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 MAPK6Q16659 721 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 ODR4Q5SWX8 454 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 CCDC73Q6ZRK6 1079 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 SV2BQ7L1I2 683 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 ZNF720Q7Z2F6 126 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 HAUS6Q7Z4H7 955 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 CMTR2Q8IYT2 770 aaKnown RBP10.15□□□□□ -0.78
VPS35-206ENST00000565228 MYCT1Q8N699 235 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 RASSF8Q8NHQ8 419 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 PAGE5Q96GU1 130 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 DRC1Q96MC2 740 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 GAD1Q99259 594 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 C7orf25Q9BPX7 421 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 TIPINQ9BVW5 301 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 APOL6Q9BWW8 343 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 CDT1Q9H211 546 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 NRDE2Q9H7Z3 1164 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 TBC1D13Q9NVG8 400 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 PRMT7Q9NVM4 692 aaPredicted RBP10.15□□□□□ -0.78
VPS35-206ENST00000565228 SNTG2Q9NY99 539 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 KCND2Q9NZV8 630 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 KLK14Q9P0G3 267 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 ODF2LQ9ULJ1 636 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 CITO14578 2027 aa10.15□□□□□ -0.78
VPS35-206ENST00000565228 PHLPP2Q6ZVD8 1323 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 A0A1W2PQ27 194 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 A0A1W2PQ64 194 aa10.14□□□□□ -0.79
VPS35-206ENST00000565228 A0A1W2PQD8 194 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms