RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	ARF4	P18085	180 aa	Predicted RBP	11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	ASIC1	P78348	528 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	USP49	Q70CQ1	688 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	PDILT	Q8N807	584 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	ACCS	Q96QU6	501 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	RSAD1	Q9HA92	442 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	PANK4	Q9NVE7	773 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947		A0A087WWV3	80 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	EIF3D	O15371	548 aa	Known RBP eCLIP	11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	UPP2	O95045	317 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	YARS	P54577	528 aa	Known RBP	11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	PDE12	Q6L8Q7	609 aa	Known RBP	11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	MPZL3	Q6UWV2	235 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	TMEM161B	Q8NDZ6	487 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	BICD1	Q96G01	975 aa		11.75	□□□□□ -0.53
UBR4-208	ENST00000459947	MYMK	A6NI61	221 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	TOM1L1	O75674	476 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	PAX3	P23760	479 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	GTF2B	Q00403	316 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	CRIPAK	Q8N1N5	446 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	CLP1	Q92989	425 aa	Known RBP	11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	PPP2R3C	Q969Q6	453 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	RPS6KC1	Q96S38	1066 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	SEMA6B	Q9H3T3	888 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	MINDY3	Q9H8M7	445 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	PTPRS	Q13332	1948 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	LINC01553	A4QN01	128 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	TBKBP1	A7MCY6	615 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	C5orf67	F2Z3F1	127 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	SLC16A4	O15374	487 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	IDE	P14735	1019 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	LIG4	P49917	911 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	CD302	Q8IX05	232 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	FBXO22	Q8NEZ5	403 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	GOLGA5	Q8TBA6	731 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	ZNF668	Q96K58	619 aa	Predicted RBP	11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	FAM193B	Q96PV7	902 aa	Predicted RBP	11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	TRIM9	Q9C026	710 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	RMND1	Q9NWS8	449 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	YBX2	Q9Y2T7	364 aa	Known RBP	11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	XPOT	O43592	962 aa	Known RBP	11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	CA3	P07451	260 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	HOXA11	P31270	313 aa	Predicted RBP	11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	TAP1	Q03518	808 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	NOMO2	Q5JPE7	1267 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	MAP4K3	Q8IVH8	894 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	DNAJC19	Q96DA6	116 aa		11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	ACO2	Q99798	780 aa	Known RBP	11.74	□□□□□ -0.53
UBR4-208	ENST00000459947	SMC2	O95347	1197 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	FGFR4	P22455	802 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	PPP1R2	P41236	205 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	GRM5	P41594	1212 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	FAM160A1	Q05DH4	1040 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	HERC4	Q5GLZ8	1057 aa	Predicted RBP	11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	UBXN11	Q5T124	520 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	L1TD1	Q5T7N2	865 aa	Known RBP	11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	ZNF558	Q96NG5	402 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	PDZD7	Q9H5P4	517 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	MRPL44	Q9H9J2	332 aa	Known RBP	11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	TBX20	Q9UMR3	447 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	LZTS1	Q9Y250	596 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	NPTXR	O95502	500 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	POU3F3	P20264	500 aa	Predicted RBP	11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	ZNF568	Q3ZCX4	644 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	CLEC17A	Q6ZS10	378 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	SFR1	Q86XK3	245 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	TMEM192	Q8IY95	271 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	OSBPL7	Q9BZF2	842 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	EXOC1	Q9NV70	894 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	SLC38A7	Q9NVC3	462 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	IPP	Q9Y573	584 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	SOX1	O00570	391 aa	Predicted RBP	11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	BMPR1A	P36894	532 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	RABGGTB	P53611	331 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	GRIK3	Q13003	919 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	NOLC1	Q14978	699 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	TIGD5	Q53EQ6	642 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	SPOUT1	Q5T280	376 aa	Known RBP	11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	GBF1	Q92538	1859 aa		11.73	□□□□□ -0.53
UBR4-208	ENST00000459947	GRXCR1	A8MXD5	290 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	LDHA	P00338	332 aa	Known RBP	11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	CTNNB1	P35222	781 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	FAM26F	Q5R3K3	315 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	FAM117B	Q6P1L5	589 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	KRBA2	Q6ZNG9	492 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	DYM	Q7RTS9	669 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	UROC1	Q96N76	676 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	TCHP	Q9BT92	498 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	PUF60	Q9UHX1	559 aa	Known RBP	11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	ACTN4	O43707	911 aa	Known RBP	11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	COASY	Q13057	564 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	NT5DC1	Q5TFE4	455 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	DEFB123	Q8N688	67 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	RNF169	Q8NCN4	708 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	PLEKHA5	Q9HAU0	1116 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	SERTAD1	Q9UHV2	236 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	KIN	O60870	393 aa	Known RBP	11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	LIG1	P18858	919 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	ZNF720	Q7Z2F6	126 aa		11.72	□□□□□ -0.53
UBR4-208	ENST00000459947	CASD1	Q96PB1	797 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms