RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TMEM191CA6NGB0 347 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 KIF3BO15066 747 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 NR4A1P22736 598 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 RAB27AP51159 221 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 SMAD3P84022 425 aaKnown RBP5.39□□□□□ -1.55
VPS29-202ENST00000447578 MCL1Q07820 350 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 MTMR1Q13613 665 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 SART3Q15020 963 aaKnown RBP5.39□□□□□ -1.55
VPS29-202ENST00000447578 SEPT7Q16181 437 aaKnown RBP5.39□□□□□ -1.55
VPS29-202ENST00000447578 MBNL2Q5VZF2 373 aaKnown RBP5.39□□□□□ -1.55
VPS29-202ENST00000447578 DDX53Q86TM3 631 aaKnown RBP5.39□□□□□ -1.55
VPS29-202ENST00000447578 ZNF276Q8N554 614 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 KIAA1958Q8N8K9 716 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 CHST14Q8NCH0 376 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 OR2W6PQ8NHA6 318 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 MTMR8Q96EF0 704 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 SMAD5Q99717 465 aaKnown RBP5.39□□□□□ -1.55
VPS29-202ENST00000447578 MLST8Q9BVC4 326 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 PUS7LQ9H0K6 701 aaKnown RBP5.39□□□□□ -1.55
VPS29-202ENST00000447578 CCDC8Q9H0W5 538 aaPredicted RBP5.39□□□□□ -1.55
VPS29-202ENST00000447578 PCIF1Q9H4Z3 704 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 MYH16Q9H6N6 1097 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS29-202ENST00000447578 ACSS2Q9NR19 701 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 SOGA1O94964 1423 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 BAZ1BQ9UIG0 1483 aaKnown RBP5.39□□□□□ -1.55
VPS29-202ENST00000447578 LOC102724159A0A0B4J2E5 919 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 SHTN1A0MZ66 631 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 GRXCR1A8MXD5 290 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 ZEB2O60315 1214 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 SLC9A1P19634 815 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 PROZP22891 400 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 LMO1P25800 156 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 PTGS2P35354 604 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 NEK2P51955 445 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 PTTG1IPP53801 180 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 TMPRSS15P98073 1019 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 PWP2Q15269 919 aaKnown RBP5.38□□□□□ -1.55
VPS29-202ENST00000447578 LRRC41Q15345 812 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 PIK3R6Q5UE93 754 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 DPY19L2P1Q6NXN4 242 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 SPATS2Q86XZ4 545 aaKnown RBP5.38□□□□□ -1.55
VPS29-202ENST00000447578 CHPFQ8IZ52 775 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 ARL8AQ96BM9 186 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 IFT22Q9H7X7 185 aa5.38□□□□□ -1.55
VPS29-202ENST00000447578 WRNQ14191 1432 aaPredicted RBP eCLIP5.38□□□□□ -1.55
VPS29-202ENST00000447578 NEMP1O14524 444 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 DAPK3O43293 454 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 MFAP3LO75121 409 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 CYP17A1P05093 508 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 JUNP05412 331 aaKnown RBP5.37□□□□□ -1.55
VPS29-202ENST00000447578 HK1P19367 917 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 ZEB1P37275 1124 aaPredicted RBP5.37□□□□□ -1.55
VPS29-202ENST00000447578 KIR2DL3P43628 341 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 FAM214AQ32MH5 1076 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 LRCH2Q5VUJ6 765 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 UNQ6494/PRO21346Q6UXR6 183 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 BMP8AQ7Z5Y6 402 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 PASD1Q8IV76 773 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 CMTM4Q8IZR5 234 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 MYO1HQ8N1T3 1032 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 MDGA1Q8NFP4 955 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 HAPLN2Q9GZV7 340 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 AASDHPPTQ9NRN7 309 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 ZIM2Q9NZV7 527 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 EEA1Q15075 1411 aa5.37□□□□□ -1.55
VPS29-202ENST00000447578 GOLGA6L6A8MZA4 724 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 H7C1D1 291 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 AKAP10O43572 662 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 APOL3O95236 402 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 GCP02774 474 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 BPIP17213 487 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 ID4P47928 161 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 KRTAP10-9P60411 292 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 SPIDRQ14159 915 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 GORABQ5T7V8 394 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 MFSD5Q6N075 450 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 ESRP1Q6NXG1 681 aaKnown RBP5.36□□□□□ -1.55
VPS29-202ENST00000447578 HTR3DQ70Z44 454 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 RHOUQ7L0Q8 258 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 KIF18BQ86Y91 864 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 CNTD1Q8N815 330 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 ELF4Q99607 663 aaPredicted RBP5.36□□□□□ -1.55
VPS29-202ENST00000447578 SPEF1Q9Y4P9 236 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 RUSC2Q8N2Y8 1516 aa5.36□□□□□ -1.55
VPS29-202ENST00000447578 TNIKQ9UKE5 1360 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 A0A0A6YYK5 440 aaPredicted RBP5.35□□□□□ -1.55
VPS29-202ENST00000447578 CAND2O75155 1236 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 SCGB1D2O95969 90 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 CFBP00751 764 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 ATF3P18847 181 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 NPEPPSP55786 919 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 BCAR1P56945 870 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 IL2P60568 153 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 ADCY2Q08462 1091 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 EPHA7Q15375 998 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 ZNF174Q15697 407 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 C14orf80Q86SX3 495 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 ZBTB46Q86UZ6 589 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 CXorf67Q86X51 503 aaPredicted RBP5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms