RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 UHRF1Q96T88 793 aaPredicted RBP12.37□□□□□ -0.43
RFFL-204ENST00000414419 TCF25Q9BQ70 676 aa12.37□□□□□ -0.43
RFFL-204ENST00000414419 ADPGKQ9BRR6 497 aa12.37□□□□□ -0.43
RFFL-204ENST00000414419 TIPINQ9BVW5 301 aa12.37□□□□□ -0.43
RFFL-204ENST00000414419 FZD8Q9H461 694 aa12.37□□□□□ -0.43
RFFL-204ENST00000414419 ZSCAN16Q9H4T2 348 aaPredicted RBP12.37□□□□□ -0.43
RFFL-204ENST00000414419 NRDE2Q9H7Z3 1164 aa12.37□□□□□ -0.43
RFFL-204ENST00000414419 NGRNQ9NPE2 291 aaKnown RBP12.37□□□□□ -0.43
RFFL-204ENST00000414419 KCNG1Q9UIX4 513 aa12.37□□□□□ -0.43
RFFL-204ENST00000414419 FAM50BQ9Y247 325 aa12.37□□□□□ -0.43
RFFL-204ENST00000414419 H3BQ06 376 aaPredicted RBP12.36□□□□□ -0.43
RFFL-204ENST00000414419 ACKR2O00590 384 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 HIP1RO75146 1068 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 NR1I2O75469 434 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 POMCP01189 267 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 PLA2G4BP0C869 781 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 NDUFV1P49821 464 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 PEX3P56589 373 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 ERVFC1P60507 584 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 PLPP4Q5VZY2 271 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 KCNK18Q7Z418 384 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 APBB1IPQ7Z5R6 666 aaPredicted RBP12.36□□□□□ -0.43
RFFL-204ENST00000414419 ADGRD2Q7Z7M1 963 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 PNMA5Q96PV4 448 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 GAD1Q99259 594 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 C17orf75Q9HAS0 396 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 KCND2Q9NZV8 630 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 PARP2Q9UGN5 583 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 FAN1Q9Y2M0 1017 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 GIT1Q9Y2X7 761 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 HES2Q9Y543 173 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 TTC28Q96AY4 2481 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 TRIP11Q15643 1979 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 PHLPP2Q6ZVD8 1323 aa12.36□□□□□ -0.43
RFFL-204ENST00000414419 MYH15Q9Y2K3 1946 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 ARL5CA6NH57 179 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 TNFRSF10AO00220 468 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 GALTP07902 379 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 SRGAP2BP0DMP2 458 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 PDIA4P13667 645 aaKnown RBP12.35□□□□□ -0.43
RFFL-204ENST00000414419 AKAP5P24588 427 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 GUCY2CP25092 1073 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 GTF2F1P35269 517 aaKnown RBP eCLIP12.35□□□□□ -0.43
RFFL-204ENST00000414419 MLH1P40692 756 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 SMTNP53814 917 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 CEBPZQ03701 1054 aaKnown RBP12.35□□□□□ -0.43
RFFL-204ENST00000414419 RESTQ13127 1097 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 SMC1AQ14683 1233 aaKnown RBP12.35□□□□□ -0.43
RFFL-204ENST00000414419 PTCRAQ6ISU1 281 aaPredicted RBP12.35□□□□□ -0.43
RFFL-204ENST00000414419 C1orf186Q6ZWK4 172 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 ZNF280BQ86YH2 543 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 EFHBQ8N7U6 833 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 SYT2Q8N9I0 419 aaPredicted RBP12.35□□□□□ -0.43
RFFL-204ENST00000414419 RPS6KC1Q96S38 1066 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 CDCA3Q99618 268 aaPredicted RBP12.35□□□□□ -0.43
RFFL-204ENST00000414419 TMEM175Q9BSA9 504 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 KIFC3Q9BVG8 833 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 RUSC1Q9BVN2 902 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 RNF39Q9H2S5 420 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 NXF3Q9H4D5 531 aaKnown RBP12.35□□□□□ -0.43
RFFL-204ENST00000414419 KMT5AQ9NQR1 393 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 DNAJB4Q9UDY4 337 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 DAXXQ9UER7 740 aaPredicted RBP12.35□□□□□ -0.43
RFFL-204ENST00000414419 STK39Q9UEW8 545 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 MTMR6Q9Y217 621 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 RBM19Q9Y4C8 960 aaKnown RBP12.35□□□□□ -0.43
RFFL-204ENST00000414419 PCDHGC5Q9Y5F6 944 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 CLIC4Q9Y696 253 aa12.35□□□□□ -0.43
RFFL-204ENST00000414419 VCANP13611 3396 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 SFI1A8K8P3 1242 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 FSCN2O14926 492 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 PER2O15055 1255 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 DDHD2O94830 711 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 MARCKSP29966 332 aaPredicted RBP12.34□□□□□ -0.43
RFFL-204ENST00000414419 TXLNAP40222 546 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 OR1G1P47890 313 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 NPTX2P47972 431 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 SLC11A1P49279 550 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 RAD51AP2Q09MP3 1159 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 ADAM15Q13444 863 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 DHX8Q14562 1220 aaKnown RBP12.34□□□□□ -0.43
RFFL-204ENST00000414419 COL19A1Q14993 1142 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 CLUL1Q15846 466 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 CTC1Q2NKJ3 1217 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 FAM173BQ6P4H8 233 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 DDX53Q86TM3 631 aaKnown RBP12.34□□□□□ -0.43
RFFL-204ENST00000414419 VPS52Q8N1B4 723 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.34□□□□□ -0.43
RFFL-204ENST00000414419 IGSF21Q96ID5 467 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 ZFP42Q96MM3 310 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 CCDC113Q9H0I3 377 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 PDZD7Q9H5P4 517 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 TMEM134Q9H6X4 195 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 CCDC39Q9UFE4 941 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 XIRP2A4UGR9 3374 aa12.34□□□□□ -0.43
RFFL-204ENST00000414419 CITO14578 2027 aa12.33□□□□□ -0.43
RFFL-204ENST00000414419 GRXCR2A6NFK2 248 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 NRP1O14786 923 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 LINC01565O15544 149 aa12.33□□□□□ -0.44
RFFL-204ENST00000414419 CXCL14O95715 111 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms