RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 VIL1P09327 827 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 IL1R1P14778 569 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 NR2F2P24468 414 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 MAP4P27816 1152 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 GARSP41250 739 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 NSUN2Q08J23 767 aaKnown RBP eCLIP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 EMC2Q15006 297 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 CEP55Q53EZ4 464 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 TTC19Q6DKK2 380 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 NUP58Q9BVL2 599 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 GAKO14976 1311 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 SYNDIG1LA6NDD5 238 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 AP1G2O75843 785 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 GSDMDP57764 484 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 ZNF177Q13360 481 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 SLC12A1Q13621 1099 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 RBBP5Q15291 538 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 ATF7IP2Q5U623 682 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 SPECC1LQ69YQ0 1117 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 CTR9Q6PD62 1173 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 SSH3Q8TE77 659 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 NSUN4Q96CB9 384 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 OSMRQ99650 979 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 INPP4BO15327 924 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 SELPP16109 830 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 BZW1Q7L1Q6 419 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 CPA6Q8N4T0 437 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 NEDD1Q8NHV4 660 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 CCHCR1Q8TD31 782 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 TIFAQ96CG3 184 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 CCDC3Q9BQI4 270 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 SPATA16Q9BXB7 569 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 PDGFDQ9GZP0 370 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 RIC8AQ9NPQ8 531 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 AK5Q9Y6K8 562 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 DIP2CQ9Y2E4 1556 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 CFAP69A5D8W1 941 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 M0QYT0 321 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 ADCY6O43306 1168 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 TMCC1O94876 653 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 TAF6P49848 677 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 NOP14P78316 857 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 PRKAA1Q13131 559 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 HIC1Q14526 733 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 FAM110CQ1W6H9 321 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 PABPC1LQ4VXU2 614 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 ATL3Q6DD88 541 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 TTC8Q8TAM2 541 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 ZSCAN18Q8TBC5 510 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 TRIM54Q9BYV2 358 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 TSR3Q9UJK0 312 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 PPP1R9AQ9ULJ8 1098 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 ICAM1P05362 532 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 KCNA5P22460 613 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 CDR2Q01850 454 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 AP1B1Q10567 949 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 TWF1Q12792 350 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 DUOXA2Q1HG44 320 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 PPP6R3Q5H9R7 873 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 ANKS6Q68DC2 871 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 GPR20Q99678 358 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 OSGEPL1Q9H4B0 414 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 RBAKQ9NYW8 714 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 SYF2O95926 243 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 OCM2P0CE71 109 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 OCMP0CE72 109 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 ALPPL2P10696 532 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 MICALCLQ6ZW33 695 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 NRSN1Q8IZ57 195 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 GMCL1Q96IK5 515 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 BRPF3Q9ULD4 1205 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 V9GYY5 206 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 DIP2AQ14689 1571 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 SEPT4O43236 478 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 NMT2O60551 498 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 PNPLA4P41247 253 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 SCNN1BP51168 640 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 UBE2HP62256 183 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 APBB2Q92870 758 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 PRIMPOLQ96LW4 560 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 AK8Q96MA6 479 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 RAB3IPQ96QF0 476 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 NUDCD1Q96RS6 583 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 FBXO28Q9NVF7 368 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 SRRDQ9UH36 339 aa9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 AGO2Q9UKV8 859 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-202ENST00000381753 DGAT1O75907 488 aa9.82□□□□□ -0.84
LIMCH1-202ENST00000381753 ASS1P00966 412 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-202ENST00000381753 SEMA3FQ13275 785 aa9.82□□□□□ -0.84
LIMCH1-202ENST00000381753 ARID5BQ14865 1188 aa9.82□□□□□ -0.84
LIMCH1-202ENST00000381753 TMED2Q15363 201 aa9.82□□□□□ -0.84
LIMCH1-202ENST00000381753 CLEC10AQ8IUN9 316 aa9.82□□□□□ -0.84
LIMCH1-202ENST00000381753 ACER1Q8TDN7 264 aa9.82□□□□□ -0.84
LIMCH1-202ENST00000381753 CDKL2Q92772 493 aa9.82□□□□□ -0.84
LIMCH1-202ENST00000381753 ABHD8Q96I13 439 aa9.82□□□□□ -0.84
LIMCH1-202ENST00000381753 SRRTQ9BXP5 876 aaKnown RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms