RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CCDC51Q96ER9 411 aa22.38■■□□□ 1.17
PTCD3-220ENST00000627371 RAD9AQ99638 391 aa22.38■■□□□ 1.17
PTCD3-220ENST00000627371 TMEM134Q9H6X4 195 aa22.38■■□□□ 1.17
PTCD3-220ENST00000627371 ELAC1Q9H777 363 aaKnown RBP22.38■■□□□ 1.17
PTCD3-220ENST00000627371 INSL6Q9Y581 213 aa22.38■■□□□ 1.17
PTCD3-220ENST00000627371 RALGAPA2Q2PPJ7 1873 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 ACKR2O00590 384 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 SLC16A4O15374 487 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 B4GALT5O43286 388 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 MYOGP15173 224 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 NDUFA8P51970 172 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 NCKAP1LP55160 1127 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 AMPD3Q01432 767 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 CSPP1Q1MSJ5 1256 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 ECHDC2Q86YB7 292 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 MYCT1Q8N699 235 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 STAMQ92783 540 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 KCNN1Q92952 543 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 TIFAQ96CG3 184 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 CPB2Q96IY4 423 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 YME1L1Q96TA2 773 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 RC3H2Q9HBD1 1191 aaKnown RBP22.37■■□□□ 1.17
PTCD3-220ENST00000627371 FAM105AQ9NUU6 356 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 TMEM161AQ9NX61 479 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 USP25Q9UHP3 1055 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 LRFN2Q9ULH4 789 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 PCDHB7Q9Y5E2 793 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 CDH23Q9H251 3354 aa22.37■■□□□ 1.17
PTCD3-220ENST00000627371 KIAA1671Q9BY89 1806 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 H0YCG3 227 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 K7ERI5 159 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 ACTN4O43707 911 aaKnown RBP22.36■■□□□ 1.17
PTCD3-220ENST00000627371 SKIP12755 728 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 SYKP43405 635 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 RAB27AP51159 221 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 PRPF4BQ13523 1007 aaKnown RBP22.36■■□□□ 1.17
PTCD3-220ENST00000627371 CEP57L1Q8IYX8 460 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 TMEM161BQ8NDZ6 487 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 TRIM9Q9C026 710 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 GOLPH3LQ9H4A5 285 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 ZHX3Q9H4I2 956 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 SERTAD1Q9UHV2 236 aa22.36■■□□□ 1.17
PTCD3-220ENST00000627371 TMEM265A0A087WTH1 108 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 A0A1B0GUA9 196 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 FRMD3A2A2Y4 597 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 GOLGA6L4A6NEF3 574 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 TRAK2O60296 914 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 DGKIO75912 1065 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 EDN1P05305 212 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 CA3P07451 260 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 SLFN14P0C7P3 912 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 MAPTP10636 758 aaKnown RBP22.35■■□□□ 1.17
PTCD3-220ENST00000627371 LIG1P18858 919 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 IBSPP21815 317 aaPredicted RBP22.35■■□□□ 1.17
PTCD3-220ENST00000627371 TPRNQ4KMQ1 711 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 UBXN11Q5T124 520 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 CNNM4Q6P4Q7 775 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 TAS1R3Q7RTX0 852 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 ZNF598Q86UK7 904 aaKnown RBP22.35■■□□□ 1.17
PTCD3-220ENST00000627371 SP7Q8TDD2 431 aaPredicted RBP22.35■■□□□ 1.17
PTCD3-220ENST00000627371 ZNF689Q96CS4 500 aaPredicted RBP22.35■■□□□ 1.17
PTCD3-220ENST00000627371 FIZ1Q96SL8 496 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 NKX2-4Q9H2Z4 354 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 SEL1LQ9UBV2 794 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 CHD9Q3L8U1 2897 aa22.35■■□□□ 1.17
PTCD3-220ENST00000627371 MYO9BQ13459 2157 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 LCHNA4D1U4 455 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 TTLL13PA6NNM8 815 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 ZNF623O75123 536 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 EOMESO95936 686 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 ATF7P17544 494 aaPredicted RBP22.34■■□□□ 1.17
PTCD3-220ENST00000627371 GAP43P17677 238 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 SCP2P22307 547 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 SFR1Q86XK3 245 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 FAM178BQ8IXR5 827 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 TMEM87AQ8NBN3 555 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 SLC17A8Q8NDX2 589 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 C7orf25Q9BPX7 421 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 PCDHB2Q9Y5E7 798 aa22.34■■□□□ 1.17
PTCD3-220ENST00000627371 K7ENM7 598 aa22.33■■□□□ 1.17
PTCD3-220ENST00000627371 N4BP3O15049 544 aa22.33■■□□□ 1.17
PTCD3-220ENST00000627371 IDEP14735 1019 aa22.33■■□□□ 1.17
PTCD3-220ENST00000627371 LONRF3Q496Y0 759 aa22.33■■□□□ 1.17
PTCD3-220ENST00000627371 SLC27A1Q6PCB7 646 aa22.33■■□□□ 1.17
PTCD3-220ENST00000627371 HAUS6Q7Z4H7 955 aa22.33■■□□□ 1.17
PTCD3-220ENST00000627371 EIF2AQ9BY44 585 aaKnown RBP22.33■■□□□ 1.17
PTCD3-220ENST00000627371 MRPL4Q9BYD3 311 aaKnown RBP22.33■■□□□ 1.17
PTCD3-220ENST00000627371 PDZD7Q9H5P4 517 aa22.33■■□□□ 1.17
PTCD3-220ENST00000627371 SLC28A3Q9HAS3 691 aa22.33■■□□□ 1.17
PTCD3-220ENST00000627371 HOXA2O43364 376 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 ABCD1P33897 745 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 STRN3Q13033 797 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 TMEM132AQ24JP5 1023 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 ZNF697Q5TEC3 545 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 NT5DC1Q5TFE4 455 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 PPP2R2DQ66LE6 453 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 CDR2LQ86X02 465 aaPredicted RBP22.32■■□□□ 1.16
PTCD3-220ENST00000627371 CCDC65Q8IXS2 484 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 RNF169Q8NCN4 708 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 CNNM3Q8NE01 707 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms