RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ZNF558Q96NG5 402 aa17.93■□□□□ 0.46
TRIM28-206ENST00000595974 CSRNP2Q9H175 543 aa17.93■□□□□ 0.46
TRIM28-206ENST00000595974 ZSCAN16Q9H4T2 348 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-206ENST00000595974 CARNS1A5YM72 827 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 FGF18O76093 207 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 NCLP19338 710 aaKnown RBP17.92■□□□□ 0.46
TRIM28-206ENST00000595974 ZRSR1Q15695 479 aaKnown RBP17.92■□□□□ 0.46
TRIM28-206ENST00000595974 TMEM119Q4V9L6 283 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 TCEAL5Q5H9L2 206 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 KCNT2Q6UVM3 1135 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 CABP7Q86V35 215 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 DEPTORQ8TB45 409 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 POF1BQ8WVV4 589 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 CPB2Q96IY4 423 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 PNMA5Q96PV4 448 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 ASB2Q96Q27 587 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 TIPINQ9BVW5 301 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 RSAD1Q9HA92 442 aa17.92■□□□□ 0.46
TRIM28-206ENST00000595974 TCF20Q9UGU0 1960 aaKnown RBP17.91■□□□□ 0.46
TRIM28-206ENST00000595974 MEIS3P2A8K0S8 358 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 B4GALT5O43286 388 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 HSP90AA1P07900 732 aaKnown RBP17.91■□□□□ 0.46
TRIM28-206ENST00000595974 PDIA4P13667 645 aaKnown RBP17.91■□□□□ 0.46
TRIM28-206ENST00000595974 DNAJB1P25685 340 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 UBA7P41226 1012 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 CAMK1Q14012 370 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 PTPAQ15257 358 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 MAPK6Q16659 721 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 LONRF3Q496Y0 759 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 NOMO2Q5JPE7 1267 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 RINT1Q6NUQ1 792 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 SLC27A1Q6PCB7 646 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 AGMOQ6ZNB7 445 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 HACE1Q8IYU2 909 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 URGCPQ8TCY9 931 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 SYMPKQ92797 1274 aaKnown RBP17.91■□□□□ 0.46
TRIM28-206ENST00000595974 PPP2R3CQ969Q6 453 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 CALML4Q96GE6 196 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 DRC1Q96MC2 740 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 RUSC1Q9BVN2 902 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 EIF2AQ9BY44 585 aaKnown RBP17.91■□□□□ 0.46
TRIM28-206ENST00000595974 TRIM6Q9C030 488 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-206ENST00000595974 CCDC113Q9H0I3 377 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 FZD8Q9H461 694 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 UBE2ZQ9H832 354 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-206ENST00000595974 UBN1Q9NPG3 1134 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 LZTS1Q9Y250 596 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 INPP5FQ9Y2H2 1132 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 IPPQ9Y573 584 aa17.91■□□□□ 0.46
TRIM28-206ENST00000595974 A0A1B0GUA9 196 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 NCK2O43639 380 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 HIP1RO75146 1068 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 OFD1O75665 1012 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 PRKCBP05771 671 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 GUCY2CP25092 1073 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 EFNA5P52803 228 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 PLCB3Q01970 1234 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 COL19A1Q14993 1142 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 C1orf186Q6ZWK4 172 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 SYT2Q8N9I0 419 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-206ENST00000595974 SMG8Q8ND04 991 aaKnown RBP17.9■□□□□ 0.46
TRIM28-206ENST00000595974 C17orf75Q9HAS0 396 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 TLR9Q9NR96 1032 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 TBC1D13Q9NVG8 400 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 KCND2Q9NZV8 630 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 DAXXQ9UER7 740 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-206ENST00000595974 CLIC4Q9Y696 253 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 MORC2Q9Y6X9 1032 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-206ENST00000595974 ZMYM2Q9UBW7 1377 aa17.9■□□□□ 0.46
TRIM28-206ENST00000595974 CSPG5O95196 566 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 ITGA4P13612 1032 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 TFF2Q03403 129 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 GRIN1Q05586 938 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 RNASELQ05823 741 aaKnown RBP17.89■□□□□ 0.45
TRIM28-206ENST00000595974 MAPK7Q13164 816 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 DMP1Q13316 513 aaPredicted RBP17.89■□□□□ 0.45
TRIM28-206ENST00000595974 PDE12Q6L8Q7 609 aaKnown RBP17.89■□□□□ 0.45
TRIM28-206ENST00000595974 FAM173BQ6P4H8 233 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 DAW1Q8N136 415 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 SLC39A11Q8N1S5 342 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 MRPS27Q92552 414 aaKnown RBP17.89■□□□□ 0.45
TRIM28-206ENST00000595974 PABPC5Q96DU9 382 aaKnown RBP17.89■□□□□ 0.45
TRIM28-206ENST00000595974 SPG21Q9NZD8 308 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 KANSL3Q9P2N6 904 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 PUF60Q9UHX1 559 aaKnown RBP17.89■□□□□ 0.45
TRIM28-206ENST00000595974 PHLPP2Q6ZVD8 1323 aa17.89■□□□□ 0.45
TRIM28-206ENST00000595974 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.88■□□□□ 0.45
TRIM28-206ENST00000595974 ACKR2O00590 384 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 N4BP3O15049 544 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 INPPL1O15357 1258 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 ZC3H11AO75152 810 aaKnown RBP eCLIP17.88■□□□□ 0.45
TRIM28-206ENST00000595974 SSBP05455 408 aaKnown RBP eCLIP17.88■□□□□ 0.45
TRIM28-206ENST00000595974 PLA2G4BP0C869 781 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 IRS1P35568 1242 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 PBX3P40426 434 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 ALDH7A1P49419 539 aaKnown RBP17.88■□□□□ 0.45
TRIM28-206ENST00000595974 SLC12A3P55017 1021 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 BCAR1P56945 870 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 KRT17Q04695 432 aa17.88■□□□□ 0.45
TRIM28-206ENST00000595974 PRPF4BQ13523 1007 aaKnown RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms