RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 AAASQ9NRG9 546 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 LARSQ9P2J5 1176 aaKnown RBP14.34□□□□□ -0.11
CLK3-224ENST00000568605 TFIP11Q9UBB9 837 aaKnown RBP14.34□□□□□ -0.11
CLK3-224ENST00000568605 CARNS1A5YM72 827 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 TBKBP1A7MCY6 615 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 N4BP3O15049 544 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 PRKCBP05771 671 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 NCLP19338 710 aaKnown RBP14.33□□□□□ -0.12
CLK3-224ENST00000568605 SCP2P22307 547 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 ME1P48163 572 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 PEX3P56589 373 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 NUCB2P80303 420 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 DNM1Q05193 864 aaKnown RBP14.33□□□□□ -0.12
CLK3-224ENST00000568605 PRPF4BQ13523 1007 aaKnown RBP14.33□□□□□ -0.12
CLK3-224ENST00000568605 DHX8Q14562 1220 aaKnown RBP14.33□□□□□ -0.12
CLK3-224ENST00000568605 FAM187BQ17R55 369 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 SPOUT1Q5T280 376 aaKnown RBP14.33□□□□□ -0.12
CLK3-224ENST00000568605 SLC27A1Q6PCB7 646 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 GLB1LQ6UWU2 654 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 TMEM192Q8IY95 271 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 BSNDQ8WZ55 320 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 CLP1Q92989 425 aaKnown RBP14.33□□□□□ -0.12
CLK3-224ENST00000568605 PYM1Q9BRP8 204 aaKnown RBP14.33□□□□□ -0.12
CLK3-224ENST00000568605 ADPGKQ9BRR6 497 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 C17orf80Q9BSJ5 609 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 PLVAPQ9BX97 442 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 BLOC1S4Q9NUP1 217 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 RBM19Q9Y4C8 960 aaKnown RBP14.33□□□□□ -0.12
CLK3-224ENST00000568605 PCDHB2Q9Y5E7 798 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 CHD7Q9P2D1 2997 aa14.33□□□□□ -0.12
CLK3-224ENST00000568605 RBAK-RBAKDNI3L0D1 243 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 ZNF623O75123 536 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 FAM13AO94988 1023 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 ARHGEF15O94989 841 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 RB1P06400 928 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 FGFR1P11362 822 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 ARF4P18085 180 aaPredicted RBP14.32□□□□□ -0.12
CLK3-224ENST00000568605 LAG3P18627 525 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 LIG1P18858 919 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 IGFBP4P22692 258 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 ABCD1P33897 745 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 NPTX2P47972 431 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 RAD51AP2Q09MP3 1159 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 CSPP1Q1MSJ5 1256 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 EPC2Q52LR7 807 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 ZNF598Q86UK7 904 aaKnown RBP14.32□□□□□ -0.12
CLK3-224ENST00000568605 URGCPQ8TCY9 931 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 REEP2Q9BRK0 252 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 SCAND2PQ9GZW5 306 aaPredicted RBP14.32□□□□□ -0.12
CLK3-224ENST00000568605 FZD8Q9H461 694 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 CUEDC2Q9H467 287 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 UBN1Q9NPG3 1134 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 FAM13BQ9NYF5 915 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 MRPL42Q9Y6G3 142 aaKnown RBP14.32□□□□□ -0.12
CLK3-224ENST00000568605 ZMYM2Q9UBW7 1377 aa14.32□□□□□ -0.12
CLK3-224ENST00000568605 C5orf67F2Z3F1 127 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 K7ERI5 159 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 ACKR2O00590 384 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 PLS3P13797 630 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 ATF7P17544 494 aaPredicted RBP14.31□□□□□ -0.12
CLK3-224ENST00000568605 HOXA11P31270 313 aaPredicted RBP14.31□□□□□ -0.12
CLK3-224ENST00000568605 DDIT3P35638 169 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 STRN3Q13033 797 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 MAPK7Q13164 816 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 MCM6Q14566 821 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 AMHR2Q16671 573 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 PTPROQ16827 1216 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 NAALADL2Q58DX5 795 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 USP49Q70CQ1 688 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 SV2BQ7L1I2 683 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 DAW1Q8N136 415 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 SLC17A8Q8NDX2 589 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 MAFAQ8NHW3 353 aaPredicted RBP14.31□□□□□ -0.12
CLK3-224ENST00000568605 GDPD5Q8WTR4 605 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 SPIRE2Q8WWL2 714 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 P2RX5Q93086 422 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 CPB2Q96IY4 423 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 SPATA32Q96LK8 384 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 KIFC3Q9BVG8 833 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 LRRC27Q9C0I9 530 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 CCDC113Q9H0I3 377 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 TMEM134Q9H6X4 195 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 PARVGQ9HBI0 331 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 LMCD1Q9NZU5 365 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 ARHGAP28Q9P2N2 729 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 PCDHB12Q9Y5F1 795 aa14.31□□□□□ -0.12
CLK3-224ENST00000568605 A0A1B0GUA9 196 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 B4GALT5O43286 388 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 ITGA4P13612 1032 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 GATMP50440 423 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 DCAF4L1Q3SXM0 396 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 CLLU1OSQ5K130 101 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 HELQQ8TDG4 1101 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 MRPL4Q9BYD3 311 aaKnown RBP14.3□□□□□ -0.12
CLK3-224ENST00000568605 LMAN2LQ9H0V9 348 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 RSAD1Q9HA92 442 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 MAGEF1Q9HAY2 307 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 IPPQ9Y573 584 aa14.3□□□□□ -0.12
CLK3-224ENST00000568605 EPOPA6NHQ4 379 aa14.29□□□□□ -0.12
CLK3-224ENST00000568605 H3BNC9 293 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms