RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CLLU1OSQ5K130 101 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 UBXN11Q5T124 520 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 AXDND1Q5T1B0 1012 aaPredicted RBP10.34□□□□□ -0.75
LDLR-211ENST00000560173 GPBP1Q86WP2 473 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 FIBCD1Q8N539 461 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 DEPTORQ8TB45 409 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 LARP4BQ92615 738 aaKnown RBP10.34□□□□□ -0.75
LDLR-211ENST00000560173 CLP1Q92989 425 aaKnown RBP10.34□□□□□ -0.75
LDLR-211ENST00000560173 CHAMP1Q96JM3 812 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 PRIMPOLQ96LW4 560 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 C17orf80Q9BSJ5 609 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 FZD8Q9H461 694 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 C17orf75Q9HAS0 396 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 FAM105AQ9NUU6 356 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 PRMT7Q9NVM4 692 aaPredicted RBP10.34□□□□□ -0.75
LDLR-211ENST00000560173 CCDC39Q9UFE4 941 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 RCOR1Q9UKL0 485 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 MRPL42Q9Y6G3 142 aaKnown RBP10.34□□□□□ -0.75
LDLR-211ENST00000560173 CNTNAP2Q9UHC6 1331 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 HOXA2O43364 376 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 ZNF623O75123 536 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 EOMESO95936 686 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 EDN1P05305 212 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 PRKCBP05771 671 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 SKIP12755 728 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 EFNA5P52803 228 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 PEX3P56589 373 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 CACNB1Q02641 598 aaPredicted RBP10.33□□□□□ -0.76
LDLR-211ENST00000560173 DMP1Q13316 513 aaPredicted RBP10.33□□□□□ -0.76
LDLR-211ENST00000560173 ADGRE1Q14246 886 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 DHX8Q14562 1220 aaKnown RBP10.33□□□□□ -0.76
LDLR-211ENST00000560173 MAPK6Q16659 721 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 RRAGBQ5VZM2 374 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 NOTUMQ6P988 496 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 SHC4Q6S5L8 630 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 CCDC73Q6ZRK6 1079 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 RNF169Q8NCN4 708 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 SPIRE2Q8WWL2 714 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 CPB2Q96IY4 423 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 SAMD11Q96NU1 681 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 REEP2Q9BRK0 252 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 TMEM117Q9H0C3 514 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 ARHGAP28Q9P2N2 729 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 MTUS1Q9ULD2 1270 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 ODF2LQ9ULJ1 636 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 PCDHA7Q9UN72 937 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 PCDHB2Q9Y5E7 798 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 ATP6V1DQ9Y5K8 247 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 PRRC2BQ5JSZ5 2229 aaKnown RBP10.33□□□□□ -0.76
LDLR-211ENST00000560173 PHLPP2Q6ZVD8 1323 aa10.33□□□□□ -0.76
LDLR-211ENST00000560173 COL4A4P53420 1690 aaPredicted RBP10.32□□□□□ -0.76
LDLR-211ENST00000560173 A0A1B0GUA9 196 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 TTLL13PA6NNM8 815 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 CCDC169A6NNP5 214 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 TBKBP1A7MCY6 615 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 MEIS3P2A8K0S8 358 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 SFI1A8K8P3 1242 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 RFXAPO00287 272 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 ACKR2O00590 384 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 LPXNO60711 386 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 PLS3P13797 630 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 NCLP19338 710 aaKnown RBP10.32□□□□□ -0.76
LDLR-211ENST00000560173 CTNNB1P35222 781 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 STAT6P42226 847 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 ME1P48163 572 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 ZNF131P52739 623 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 KRT85P78386 507 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 NCBP1Q09161 790 aaKnown RBP10.32□□□□□ -0.76
LDLR-211ENST00000560173 EPC2Q52LR7 807 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 MRPL10Q7Z7H8 261 aaKnown RBP10.32□□□□□ -0.76
LDLR-211ENST00000560173 TMEM192Q8IY95 271 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 SMG8Q8ND04 991 aaKnown RBP10.32□□□□□ -0.76
LDLR-211ENST00000560173 FBXO22Q8NEZ5 403 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 GDPD5Q8WTR4 605 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 LEO1Q8WVC0 666 aaPredicted RBP10.32□□□□□ -0.76
LDLR-211ENST00000560173 LPPQ93052 612 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 CASD1Q96PB1 797 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 GAS2L1Q99501 681 aaPredicted RBP10.32□□□□□ -0.76
LDLR-211ENST00000560173 NTPCRQ9BSD7 190 aaKnown RBP10.32□□□□□ -0.76
LDLR-211ENST00000560173 EIF2AQ9BY44 585 aaKnown RBP10.32□□□□□ -0.76
LDLR-211ENST00000560173 KMT5AQ9NQR1 393 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 RWDD3Q9Y3V2 267 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 XIRP2A4UGR9 3374 aa10.32□□□□□ -0.76
LDLR-211ENST00000560173 FNDC1Q4ZHG4 1894 aaPredicted RBP10.32□□□□□ -0.76
LDLR-211ENST00000560173 C5orf67F2Z3F1 127 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 SLC16A4O15374 487 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 TBCAO75347 108 aaKnown RBP10.31□□□□□ -0.76
LDLR-211ENST00000560173 KRT18P05783 430 aaKnown RBP10.31□□□□□ -0.76
LDLR-211ENST00000560173 LIG1P18858 919 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 POU3F3P20264 500 aaPredicted RBP10.31□□□□□ -0.76
LDLR-211ENST00000560173 PTMSP20962 102 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 BMPR1AP36894 532 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 NUCB2P80303 420 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 PRPF4BQ13523 1007 aaKnown RBP10.31□□□□□ -0.76
LDLR-211ENST00000560173 GIT2Q14161 759 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 E2F4Q16254 413 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 LONRF3Q496Y0 759 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 NT5DC1Q5TFE4 455 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 RESP18Q5W5W9 173 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 SLC27A1Q6PCB7 646 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms