RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 HGSNATQ68CP4 663 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 ZNF467Q7Z7K2 595 aaPredicted RBP18.33■□□□□ 0.53
LDLR-206ENST00000557958 SLC35F6Q8N357 371 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 SCFD2Q8WU76 684 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 CBWD1Q9BRT8 395 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 XPNPEP1Q9NQW7 623 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 RNF186Q9NXI6 227 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 PCDHA13Q9Y5I0 950 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 MRFAP1Q9Y605 127 aa18.33■□□□□ 0.53
LDLR-206ENST00000557958 A0A0U1RQJ8 604 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 GSTTP1A0A1W2PQM5 241 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 FANCGO15287 622 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 RGS2P41220 211 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 ADCYAP1R1P41586 468 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 VPS36Q86VN1 386 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 ATRIPQ8WXE1 791 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 VTI1AQ96AJ9 217 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 SPATA33Q96N06 139 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 PCIF1Q9H4Z3 704 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 DHX33Q9H6R0 707 aaKnown RBP18.33■□□□□ 0.52
LDLR-206ENST00000557958 VTA1Q9NP79 307 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 FLRT1Q9NZU1 646 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 LRRC37A2A6NM11 1700 aa18.33■□□□□ 0.52
LDLR-206ENST00000557958 RBAK-RBAKDNI3L0D1 243 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 CCDC172P0C7W6 258 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 ACTN1P12814 892 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 CNGA1P29973 690 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 TCF7P36402 384 aaPredicted RBP18.32■□□□□ 0.52
LDLR-206ENST00000557958 LACTBP83111 547 aaPredicted RBP18.32■□□□□ 0.52
LDLR-206ENST00000557958 CYP27A1Q02318 531 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 STRN3Q13033 797 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 CELF3Q5SZQ8 465 aaKnown RBP18.32■□□□□ 0.52
LDLR-206ENST00000557958 TAPT1Q6NXT6 567 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 MAMDC4Q6UXC1 1216 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 RDH13Q8NBN7 331 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 BSNDQ8WZ55 320 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 KCNN1Q92952 543 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 ZMYND15Q9H091 742 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 ARHGAP28Q9P2N2 729 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 FHOD1Q9Y613 1164 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 WDR81Q562E7 1941 aa18.32■□□□□ 0.52
LDLR-206ENST00000557958 HNRNPDLO14979 420 aaKnown RBP18.31■□□□□ 0.52
LDLR-206ENST00000557958 GAS2O43903 313 aaKnown RBP18.31■□□□□ 0.52
LDLR-206ENST00000557958 CYP2C19P33261 490 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 MAP2K2P36507 400 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 MAGEA1P43355 309 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 NAMPTP43490 491 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 SP3Q02447 781 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 ACVR2BQ13705 512 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 KIF22Q14807 665 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 ASTE1Q2TB18 679 aaPredicted RBP18.31■□□□□ 0.52
LDLR-206ENST00000557958 SECISBP2LQ93073 1101 aaKnown RBP18.31■□□□□ 0.52
LDLR-206ENST00000557958 BICD1Q96G01 975 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 GJD2Q9UKL4 321 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 DOCK5Q9H7D0 1870 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 MYH9P35579 1960 aaKnown RBP18.31■□□□□ 0.52
LDLR-206ENST00000557958 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.31■□□□□ 0.52
LDLR-206ENST00000557958 KIAA0391O15091 583 aaKnown RBP18.31■□□□□ 0.52
LDLR-206ENST00000557958 TRIM49P0CI25 452 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 TRIM49CP0CI26 452 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 ATP4AP20648 1035 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 GARTP22102 1010 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 STAT1P42224 750 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 SLC26A2P50443 739 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 ENPEPQ07075 957 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 NCBP1Q09161 790 aaKnown RBP18.31■□□□□ 0.52
LDLR-206ENST00000557958 HSDL1Q3SXM5 330 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 C10orf76Q5T2E6 689 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 DPY19L2P1Q6NXN4 242 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 CCDC62Q6P9F0 684 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 SOCS4Q8WXH5 440 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 BBXQ8WY36 941 aaPredicted RBP18.31■□□□□ 0.52
LDLR-206ENST00000557958 GLG1Q92896 1179 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 KIFC3Q9BVG8 833 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 INTS2Q9H0H0 1204 aaKnown RBP18.31■□□□□ 0.52
LDLR-206ENST00000557958 ABHD16BQ9H3Z7 469 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 SIX2Q9NPC8 291 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 GABRQQ9UN88 632 aa18.31■□□□□ 0.52
LDLR-206ENST00000557958 MCM3APO60318 1980 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 EFCAB8A8MWE9 144 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 PMM2O15305 246 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 FERP16591 822 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 APBA1Q02410 837 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 ARID5AQ03989 594 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 SNRNP35Q16560 246 aaKnown RBP18.3■□□□□ 0.52
LDLR-206ENST00000557958 SLC18A3Q16572 532 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 TRIM58Q8NG06 486 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 DEPTORQ8TB45 409 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 POMGNT1Q8WZA1 660 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 ALS2CR12Q96Q35 445 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 KIAA1586Q9HCI6 787 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 APEX2Q9UBZ4 518 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 CDC23Q9UJX2 597 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 PLXNA1Q9UIW2 1896 aa18.3■□□□□ 0.52
LDLR-206ENST00000557958 ANO9A1A5B4 782 aa18.29■□□□□ 0.52
LDLR-206ENST00000557958 TISP43B9A030 160 aa18.29■□□□□ 0.52
LDLR-206ENST00000557958 ZNF263O14978 683 aa18.29■□□□□ 0.52
LDLR-206ENST00000557958 TACC1O75410 805 aa18.29■□□□□ 0.52
LDLR-206ENST00000557958 PRKCIP41743 596 aa18.29■□□□□ 0.52
LDLR-206ENST00000557958 SOX10P56693 466 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms