RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ZNF862O60290 1169 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 BUB1BO60566 1050 aaPredicted RBP20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 RGS20O76081 388 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 DSG3P32926 999 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 NPTX2P47972 431 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 SOX10P56693 466 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 SNRPFP62306 86 aaKnown RBP20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 TNNC1P63316 161 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 CETN1Q12798 172 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 TRADDQ15628 312 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 CASKIN2Q8WXE0 1202 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 ARHGEF26Q96DR7 871 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 HES6Q96HZ4 224 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 IWS1Q96ST2 819 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 SENP7Q9BQF6 1050 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 TMEM117Q9H0C3 514 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 SEPT11Q9NVA2 429 aaKnown RBP20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 TBX20Q9UMR3 447 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 ADAMTS5Q9UNA0 930 aa20.08■□□□□ 0.81
PRPF40B-208ENST00000548436 MYH9P35579 1960 aaKnown RBP20.08■□□□□ 0.8
PRPF40B-208ENST00000548436 KCNA2P16389 499 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 PPATQ06203 517 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 TMEM132BQ14DG7 1078 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 ANGEL2Q5VTE6 544 aaKnown RBP20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 CBWD2Q8IUF1 395 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 RDM1Q8NG50 284 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 IFT81Q8WYA0 676 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 CTNNBL1Q8WYA6 563 aaPredicted RBP20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 BSNDQ8WZ55 320 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 AGPAT1Q99943 283 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 GABBR1Q9UBS5 961 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 LCTP09848 1927 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 CCDC66A2RUB6 948 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 STBD1O95210 358 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 FAM153BP0C7A2 387 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 FAM153CQ494X1 144 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 KAT5Q92993 513 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 C12orf42Q96LP6 360 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 THAP2Q9H0W7 228 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 FAM153AQ9UHL3 310 aa20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 NOC2LQ9Y3T9 749 aaKnown RBP20.07■□□□□ 0.8
PRPF40B-208ENST00000548436 PGRMC1O00264 195 aaKnown RBP20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 MXI1P50539 228 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 MCCD1P59942 119 aaPredicted RBP20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 MAP4K3Q8IVH8 894 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 RASGEF1CQ8N431 466 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 SLC17A8Q8NDX2 589 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 SAAL1Q96ER3 474 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 AP1M1Q9BXS5 423 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 ZNFX1Q9P2E3 1918 aaKnown RBP20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 DENND3A2RUS2 1198 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 PFASO15067 1338 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 MAFGO15525 162 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 POLR2AP24928 1970 aaKnown RBP20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 CNGA1P29973 690 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 SMTNP53814 917 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 OAZ1P54368 228 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 DMP1Q13316 513 aaPredicted RBP20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 NNTQ13423 1086 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 SNRNP35Q16560 246 aaKnown RBP20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 NSUN6Q8TEA1 469 aaKnown RBP20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 CEP170P1Q96L14 293 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 ZNF541Q9H0D2 1346 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 AMFRQ9UKV5 643 aa20.06■□□□□ 0.8
PRPF40B-208ENST00000548436 LTBP3Q9NS15 1303 aa20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 ANKRD62A6NC57 917 aa20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 PMM2O15305 246 aa20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 HNRNPH2P55795 449 aaKnown RBP20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 MAP2K1Q02750 393 aaPredicted RBP20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 PAK2Q13177 524 aa20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 AFAP1L1Q8TED9 768 aa20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 KMT5AQ9NQR1 393 aa20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 COG5Q9UP83 839 aa20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 EXOC7Q9UPT5 735 aa20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 USP20Q9Y2K6 914 aa20.05■□□□□ 0.8
PRPF40B-208ENST00000548436 CAPN2P17655 700 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 SWSAP1Q6NVH7 229 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 SLC39A4Q6P5W5 647 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 OTUD6AQ7L8S5 288 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 SEMA4DQ92854 862 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 CALR3Q96L12 384 aaKnown RBP20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 SH3GL2Q99962 352 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 NTPCRQ9BSD7 190 aaKnown RBP20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 CYP39A1Q9NYL5 469 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 ITGA4P13612 1032 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 SP4Q02446 784 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 CATSPERGQ6ZRH7 1159 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 PROCA1Q8NCQ7 364 aaPredicted RBP20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 TRPM4Q8TD43 1214 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 PARD3BQ8TEW8 1205 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 VTI1AQ96AJ9 217 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 CCDC127Q96BQ5 260 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 HVCN1Q96D96 273 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 KREMEN1Q96MU8 473 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 POP1Q99575 1024 aaKnown RBP20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 MTFR1LQ9H019 292 aa20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 A1CFQ9NQ94 594 aaKnown RBP20.04■□□□□ 0.8
PRPF40B-208ENST00000548436 ADGRA3Q8IWK6 1321 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms