RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	FAM173B	Q6P4H8	233 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	SLC27A1	Q6PCB7	646 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	KCNK18	Q7Z418	384 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	NT5DC4	Q86YG4	428 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	RHPN2	Q8IUC4	686 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	MAP4K3	Q8IVH8	894 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	ADGRA3	Q8IWK6	1321 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	LRRC71	Q8N4P6	559 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	TMEM161B	Q8NDZ6	487 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	MRPS27	Q92552	414 aa	Known RBP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	EPSTI1	Q96J88	318 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	OSMR	Q99650	979 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	REEP2	Q9BRK0	252 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	FDXACB1	Q9BRP7	624 aa	Predicted RBP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	FTO	Q9C0B1	505 aa	Known RBP eCLIP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	FAM49A	Q9H0Q0	323 aa	Predicted RBP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	LMAN2L	Q9H0V9	348 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	POLR3F	Q9H1D9	316 aa	Predicted RBP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	TMX1	Q9H3N1	280 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	TMEM206	Q9H813	350 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	PTPRH	Q9HD43	1115 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	MSRA	Q9UJ68	235 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	HOOK1	Q9UJC3	728 aa	Known RBP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	LZTS1	Q9Y250	596 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	GIT1	Q9Y2X7	761 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	ATG2A	Q2TAZ0	1938 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	MTCL1	Q9Y4B5	1905 aa	Known RBP	5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	CDH23	Q9H251	3354 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	DENND3	A2RUS2	1198 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	TMEM150B	A6NC51	233 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	PP2D1	A8MPX8	630 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525		K7ERI5	159 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	ABLIM1	O14639	778 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	ZBTB39	O15060	712 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	ACTN4	O43707	911 aa	Known RBP	5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	TRAK2	O60296	914 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	HIP1R	O75146	1068 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	TBCA	O75347	108 aa	Known RBP	5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	CTSH	P09668	335 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	LINC00271	P0C7V0	271 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	MCF2	P10911	925 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	PPM1A	P35813	382 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	FXR1	P51114	621 aa	Known RBP eCLIP	5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	ERVK-21	P61565	698 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	UBE2H	P62256	183 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	POSTN	Q15063	836 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	XKR4	Q5GH76	650 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	C9orf50	Q5SZB4	431 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	SLFN12L	Q6IEE8	588 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	PDE12	Q6L8Q7	609 aa	Known RBP	5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	USP49	Q70CQ1	688 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	UNC13D	Q70J99	1090 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	CATSPER4	Q7RTX7	472 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	ZNF720	Q7Z2F6	126 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	RTN4RL1	Q86UN2	441 aa	Predicted RBP	5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	GPBP1	Q86WP2	473 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	ECHDC2	Q86YB7	292 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	CD302	Q8IX05	232 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	C12orf56	Q8IXR9	622 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	CCDC65	Q8IXS2	484 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	CEP57L1	Q8IYX8	460 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	FMR1NB	Q8N0W7	255 aa	Predicted RBP	5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	LRRC43	Q8N309	656 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	ENGASE	Q8NFI3	743 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	RASSF8	Q8NHQ8	419 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	DEPTOR	Q8TB45	409 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	GOLGA5	Q8TBA6	731 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	ASAP3	Q8TDY4	903 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	LRRC15	Q8TF66	581 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	LINC01599	Q8WXQ3	324 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	DDX12P	Q92771	950 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	TMEM143	Q96AN5	459 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	CLIC6	Q96NY7	704 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	GSDMA	Q96QA5	445 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	ADPGK	Q9BRR6	497 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	RUSC1	Q9BVN2	902 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	MRPL4	Q9BYD3	311 aa	Known RBP	5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	TMEM117	Q9H0C3	514 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	PLEKHA5	Q9HAU0	1116 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	CDHR5	Q9HBB8	845 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	KMT5A	Q9NQR1	393 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	FAM105A	Q9NUU6	356 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	CXXC1	Q9P0U4	656 aa	Predicted RBP	5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	TFIP11	Q9UBB9	837 aa	Known RBP	5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	EXOC7	Q9UPT5	735 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	PCDHB13	Q9Y5F0	798 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	SZT2	Q5T011	3432 aa		5.6	□□□□□ -1.51
HDAC6-223	ENST00000480525	COL4A4	P53420	1690 aa	Predicted RBP	5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	PRRC2B	Q5JSZ5	2229 aa	Known RBP	5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525		A0A087X0B3	334 aa		5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	MYMK	A6NI61	221 aa		5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	LRRIQ4	A6NIV6	560 aa		5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	TMEM189-UBE2V1	I3L0A0	370 aa		5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	INO80B-WBP1	J3KQ70	363 aa		5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	MAPK13	O15264	365 aa		5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	GTPBP6	O43824	516 aa	Predicted RBP	5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	MGEA5	O60502	916 aa		5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	RHOBTB3	O94955	611 aa		5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	FAM13A	O94988	1023 aa		5.59	□□□□□ -1.51
HDAC6-223	ENST00000480525	PAPLN	O95428	1278 aa		5.59	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms