RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 PBX4Q9BYU1 374 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 CCDC113Q9H0I3 377 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 FAM105AQ9NUU6 356 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 LAG3P18627 525 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 POU5F1Q01860 360 aaKnown RBP11.78□□□□□ -0.52
UBR4-208ENST00000459947 MAPK7Q13164 816 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 SHC4Q6S5L8 630 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.78□□□□□ -0.52
UBR4-208ENST00000459947 FAM178BQ8IXR5 827 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 LRRC43Q8N309 656 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 MYCT1Q8N699 235 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 REEP2Q9BRK0 252 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 TNFSF13BQ9Y275 285 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 PCDHB13Q9Y5F0 798 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 HTTP42858 3142 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 TTC3P53804 2025 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 PVALEFA0A1B0GWK0 134 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 KIAA0391O15091 583 aaKnown RBP11.77□□□□□ -0.52
UBR4-208ENST00000459947 FXR1P51114 621 aaKnown RBP eCLIP11.77□□□□□ -0.524e-6■■□□□ 14.1
UBR4-208ENST00000459947 GIT2Q14161 759 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 MAEAQ7L5Y9 396 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 LINC01599Q8WXQ3 324 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 PLIN2Q99541 437 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 C7orf25Q9BPX7 421 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 GPRC5CQ9NQ84 441 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 OLFML3Q9NRN5 406 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 KBTBD4Q9NVX7 518 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 LMCD1Q9NZU5 365 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 GIT1Q9Y2X7 761 aa11.77□□□□□ -0.52
UBR4-208ENST00000459947 SLFN14P0C7P3 912 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 PPM1AP35813 382 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 ERVK-21P61565 698 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 BTG3Q14201 252 aaPredicted RBP11.77□□□□□ -0.53
UBR4-208ENST00000459947 KSR1Q8IVT5 923 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 IPO9Q96P70 1041 aaKnown RBP11.77□□□□□ -0.53
UBR4-208ENST00000459947 NKX2-4Q9H2Z4 354 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 MYH11P35749 1972 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 TRAK2O60296 914 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 DGKIO75912 1065 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 MCF2P10911 925 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 ITGA4P13612 1032 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 SYKP43405 635 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 SNRPFP62306 86 aaKnown RBP11.77□□□□□ -0.53
UBR4-208ENST00000459947 POSTNQ15063 836 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 E2F4Q16254 413 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 SLFN12LQ6IEE8 588 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 DHX58Q96C10 678 aa11.77□□□□□ -0.53
UBR4-208ENST00000459947 GAS2L1Q99501 681 aaPredicted RBP11.77□□□□□ -0.53
UBR4-208ENST00000459947 TET1Q8NFU7 2136 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 A0A1B0GUA9 196 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 FSD2A1L4K1 749 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 INPPL1O15357 1258 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 PIGRP01833 764 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 ZNF598Q86UK7 904 aaKnown RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 FSIP1Q8NA03 581 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 TMEM87AQ8NBN3 555 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 ZNF689Q96CS4 500 aaPredicted RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 K7ENM7 598 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 BMS1Q14692 1282 aaKnown RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 DAW1Q8N136 415 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 DDX12PQ92771 950 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 P2RX5Q93086 422 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 CGNQ9P2M7 1197 aaKnown RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 HPSEQ9Y251 543 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 PCDHB2Q9Y5E7 798 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 NR1I2O75469 434 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 PSMD2Q13200 908 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 DHX8Q14562 1220 aaKnown RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 AMHR2Q16671 573 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 PTPROQ16827 1216 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 TCTN1Q2MV58 587 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 FOXD4L6Q3SYB3 417 aaPredicted RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 SPECC1Q5M775 1068 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 ATF7IP2Q5U623 682 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 FOXD4L3Q6VB84 417 aaPredicted RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 RTN4RL1Q86UN2 441 aaPredicted RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 ELOA2Q8IYF1 753 aaPredicted RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 BSNDQ8WZ55 320 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 TIGD1Q96MW7 591 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 GBP4Q96PP9 640 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 C11orf84Q9BUA3 381 aaPredicted RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 CCDC94Q9BW85 323 aaPredicted RBP11.76□□□□□ -0.53
UBR4-208ENST00000459947 ZNF576Q9H609 170 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 TMEM206Q9H813 350 aa11.76□□□□□ -0.53
UBR4-208ENST00000459947 FRMD3A2A2Y4 597 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 GOLGA6L22H0YM25 854 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 GTPBP6O43824 516 aaPredicted RBP11.75□□□□□ -0.53
UBR4-208ENST00000459947 UBE3AQ05086 875 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 ARSHQ5FYA8 562 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 UNC13DQ70J99 1090 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 HAUS6Q7Z4H7 955 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 TMEM175Q9BSA9 504 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 ZHX3Q9H4I2 956 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 RC3H2Q9HBD1 1191 aaKnown RBP11.75□□□□□ -0.53
UBR4-208ENST00000459947 TOPORSQ9NS56 1045 aaPredicted RBP11.75□□□□□ -0.53
UBR4-208ENST00000459947 PCDHB12Q9Y5F1 795 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 PCNTO95613 3336 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 POLR2DO15514 142 aaKnown RBP11.75□□□□□ -0.53
UBR4-208ENST00000459947 MGEA5O60502 916 aa11.75□□□□□ -0.53
UBR4-208ENST00000459947 PFKFB1P16118 471 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms