RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ALG6Q9Y672 507 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 SGK1O00141 431 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 RNF8O76064 485 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 CLTAP09496 248 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 PLA2G4FQ68DD2 849 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 LMBRD2Q68DH5 695 aaPredicted RBP19.88■□□□□ 0.77
USP48-204ENST00000400301 CTAGE3PQ8IX95 158 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 LRRC4BQ9NT99 713 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 TXNDC16Q9P2K2 825 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 STK38LQ9Y2H1 464 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 LRRD1A4D1F6 860 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 SUN1O94901 812 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 NPEPPSP55786 919 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 IGBP1P78318 339 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 DHX34Q14147 1143 aaKnown RBP19.88■□□□□ 0.77
USP48-204ENST00000400301 SCYL2Q6P3W7 929 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 WRNIP1Q96S55 665 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 TRAF3IP3Q9Y228 551 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 ZSCAN5CA6NGD5 496 aaPredicted RBP19.88■□□□□ 0.77
USP48-204ENST00000400301 NDC80O14777 642 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 SRGAP2CP0DJJ0 459 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 ABCD1P33897 745 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 PPP1R21Q6ZMI0 780 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 GMCL1P1Q8NEA9 526 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 SLC30A5Q8TAD4 765 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 FOXN3O00409 490 aaPredicted RBP19.87■□□□□ 0.77
USP48-204ENST00000400301 P4HA1P13674 534 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 ATP11AP98196 1134 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 KIAA1755Q5JYT7 1200 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 MEI1Q5TIA1 1274 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 CYFIP1Q7L576 1253 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 C1orf54Q8WWF1 131 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 DYNLT1P63172 113 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 SNRNP35Q16560 246 aaKnown RBP19.87■□□□□ 0.77
USP48-204ENST00000400301 SLFN12LQ6IEE8 588 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 RPAP3Q9H6T3 665 aaPredicted RBP19.87■□□□□ 0.77
USP48-204ENST00000400301 INTUQ9ULD6 942 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 COPB2P35606 906 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 MDH1P40925 334 aaKnown RBP19.87■□□□□ 0.77
USP48-204ENST00000400301 BAATQ14032 418 aaPredicted RBP19.87■□□□□ 0.77
USP48-204ENST00000400301 STYK1Q6J9G0 422 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 SCARA5Q6ZMJ2 495 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 KIAA1586Q9HCI6 787 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 CLEC11AQ9Y240 323 aa19.87■□□□□ 0.77
USP48-204ENST00000400301 THAP2Q9H0W7 228 aa19.86■□□□□ 0.77
USP48-204ENST00000400301 UBE4BO95155 1302 aa19.86■□□□□ 0.77
USP48-204ENST00000400301 PJA2O43164 708 aa19.86■□□□□ 0.77
USP48-204ENST00000400301 CASP5P51878 434 aa19.86■□□□□ 0.77
USP48-204ENST00000400301 KCNMA1Q12791 1236 aa19.86■□□□□ 0.77
USP48-204ENST00000400301 TMED2Q15363 201 aa19.86■□□□□ 0.77
USP48-204ENST00000400301 LRRC31Q6UY01 552 aa19.86■□□□□ 0.77
USP48-204ENST00000400301 WDR46O15213 610 aaKnown RBP19.86■□□□□ 0.77
USP48-204ENST00000400301 DALRD3Q5D0E6 543 aaKnown RBP19.86■□□□□ 0.77
USP48-204ENST00000400301 IVNS1ABPQ9Y6Y0 642 aa19.86■□□□□ 0.77
USP48-204ENST00000400301 PHBP35232 272 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 ZNF131P52739 623 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 SLC12A3P55017 1021 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 MTMR2Q13614 643 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 ZNF720Q7Z2F6 126 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 MORC4Q8TE76 937 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 BAP1Q92560 729 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 SLC35C1Q96A29 364 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 ELAC2Q9BQ52 826 aaKnown RBP19.85■□□□□ 0.77
USP48-204ENST00000400301 POLR3FQ9H1D9 316 aaPredicted RBP19.85■□□□□ 0.77
USP48-204ENST00000400301 OLFML3Q9NRN5 406 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 ZNRF3Q9ULT6 936 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 EML1O00423 815 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 ATMINO43313 823 aaPredicted RBP19.85■□□□□ 0.77
USP48-204ENST00000400301 ITIH3Q06033 890 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 COG2Q14746 738 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 GPD1LQ8N335 351 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 TRIM6Q9C030 488 aaPredicted RBP19.85■□□□□ 0.77
USP48-204ENST00000400301 ROBO3Q96MS0 1386 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 MARK3P27448 753 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 ECM1Q16610 540 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 KCNMB3Q9NPA1 279 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 OSGEPQ9NPF4 335 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 PIM2Q9P1W9 311 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 SCINQ9Y6U3 715 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 LSP1P33241 339 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 GDAP1Q8TB36 358 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 LPAR1Q92633 364 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 RNF25Q96BH1 459 aaPredicted RBP19.85■□□□□ 0.77
USP48-204ENST00000400301 TMX2Q9Y320 296 aa19.85■□□□□ 0.77
USP48-204ENST00000400301 CLDN3O15551 220 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 LDHAP00338 332 aaKnown RBP19.84■□□□□ 0.77
USP48-204ENST00000400301 COMTP21964 271 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 APBB1IPQ7Z5R6 666 aaPredicted RBP19.84■□□□□ 0.77
USP48-204ENST00000400301 HAUS1Q96CS2 278 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 RSRC1Q96IZ7 334 aaKnown RBP19.84■□□□□ 0.77
USP48-204ENST00000400301 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.84■□□□□ 0.77
USP48-204ENST00000400301 SCP2P22307 547 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 IL9RQ01113 521 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 KCNA1Q09470 495 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 PPP1R2P3Q6NXS1 205 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 TCP11Q8WWU5 503 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 CCT8L2Q96SF2 557 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 PCDHAC2Q9Y5I4 1007 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 SEC24CP53992 1094 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 KRT81Q14533 505 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms