RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 C1QTNF7Q9BXJ2 289 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 TUT1Q9H6E5 874 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 IGSF9BQ9UPX0 1349 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 CCINQ13939 588 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 ARHGEF18Q6ZSZ5 1173 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 SMC5Q8IY18 1101 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 PHACTR4Q8IZ21 702 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 NELFBQ8WX92 580 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 COG4Q9H9E3 785 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 NDOR1Q9UHB4 597 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 SFI1A8K8P3 1242 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 FAM47E-STBD1D6RA91 191 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 URI1O94763 535 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 THP07101 528 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 ADD1P35611 737 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 RBP5P82980 135 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 CTAGE3PQ8IX95 158 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 KCTD6Q8NC69 237 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 DDX27Q96GQ7 796 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 SARS2Q9NP81 518 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 NLRC4Q9NPP4 1024 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 PRMT7Q9NVM4 692 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 MAD1L1Q9Y6D9 718 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 LRRC7Q96NW7 1537 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 ABCA9Q8IUA7 1624 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 TMEM247A6NEH6 219 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 DYRK3O43781 588 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 RALBP11234 206 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 TIGD5Q53EQ6 642 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 PPP1R2P3Q6NXS1 205 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 CARNMT1Q8N4J0 409 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 CLMNQ96JQ2 1002 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 PLCB1Q9NQ66 1216 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 NDFIP2Q9NV92 336 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 KDM5AP29375 1690 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 SMIM23A6NLE4 172 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 PPFIA4O75335 1185 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 PLA2G4BP0C869 781 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 LAG3P18627 525 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 ZMYM1Q5SVZ6 1142 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 CHSY1Q86X52 802 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 HERC6Q8IVU3 1022 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 SMYD2Q9NRG4 433 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 SPATA31E1Q6ZUB1 1445 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 DSG3P32926 999 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 MXI1P50539 228 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 POLD3Q15054 466 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 ERICH1Q86X53 443 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 BCO2Q9BYV7 579 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 STMN4Q9H169 189 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 RGL1Q9NZL6 768 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 GPN3Q9UHW5 284 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 PDGFRBP09619 1106 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 YWHABP31946 246 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 ITGA7Q13683 1181 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 ERCC6LQ2NKX8 1250 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 HSPH1Q92598 858 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 SYNRGQ9UMZ2 1314 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 MBD5Q9P267 1494 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 A0A1B0GVL5 298 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 E5RI56 91 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 NVLO15381 856 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 VTNP04004 478 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 ZNF165P49910 485 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 SUZ12Q15022 739 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 RAPH1Q70E73 1250 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 SMAP1Q8IYB5 467 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 TAAR1Q96RJ0 339 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 ADAM2Q99965 735 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 CALN1Q9BXU9 219 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 ZNF212Q9UDV6 495 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 PTCH2Q9Y6C5 1203 aa9.85□□□□□ -0.83
LIMCH1-202ENST00000381753 BTBD19C9JJ37 291 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 LAMTOR5O43504 91 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 PRKCEQ02156 737 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 GRIK4Q16099 956 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 NOSTRINQ8IVI9 506 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 GIMAP7Q8NHV1 300 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 SETD7Q8WTS6 366 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 TRIM11Q96F44 468 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 FAM20AQ96MK3 541 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 SMC6Q96SB8 1091 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 TSGA10Q9BZW7 698 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 SPATA6Q9NWH7 488 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 DSEQ9UL01 958 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 CTAGE9A4FU28 777 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 ENC1O14682 589 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 MAFGO15525 162 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 LONP1P36776 959 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 RPS6P62753 249 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 PDE1BQ01064 536 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 EFHC2Q5JST6 749 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 XRRA1Q6P2D8 792 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 EPSTI1Q96J88 318 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 RNF26Q9BY78 433 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 SLC32A1Q9H598 525 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 TLR7Q9NYK1 1049 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 A0A0D9SFI3 127 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 CASTOR2A6NHX0 329 aa9.84□□□□□ -0.83
LIMCH1-202ENST00000381753 DFFAO00273 331 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms