RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CPT1AP50416 773 aa24.7■■□□□ 1.55
CDX1-201ENST00000231656 NCBP1Q09161 790 aaKnown RBP24.7■■□□□ 1.55
CDX1-201ENST00000231656 ZNF662Q6ZS27 426 aa24.7■■□□□ 1.55
CDX1-201ENST00000231656 AGPAT3Q9NRZ7 376 aa24.7■■□□□ 1.55
CDX1-201ENST00000231656 DMAC2Q9NW81 257 aa24.7■■□□□ 1.55
CDX1-201ENST00000231656 WBP1LQ9NX94 342 aa24.7■■□□□ 1.55
CDX1-201ENST00000231656 ARHGAP20Q9P2F6 1191 aa24.7■■□□□ 1.55
CDX1-201ENST00000231656 MAFO75444 373 aaPredicted RBP24.7■■□□□ 1.54
CDX1-201ENST00000231656 CCND3P30281 292 aaPredicted RBP24.7■■□□□ 1.54
CDX1-201ENST00000231656 KRT83P78385 493 aa24.7■■□□□ 1.54
CDX1-201ENST00000231656 RBM10P98175 930 aaKnown RBP24.7■■□□□ 1.54
CDX1-201ENST00000231656 ALCAMQ13740 583 aa24.7■■□□□ 1.54
CDX1-201ENST00000231656 CRACR2AQ9BSW2 395 aa24.7■■□□□ 1.54
CDX1-201ENST00000231656 MKNK1Q9BUB5 465 aa24.7■■□□□ 1.54
CDX1-201ENST00000231656 GBP3Q9H0R5 595 aa24.7■■□□□ 1.54
CDX1-201ENST00000231656 KAT6AQ92794 2004 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 K7ENM7 598 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 PRMT2P55345 433 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 MAP3K21Q5TCX8 1036 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 DPY19L2P1Q6NXN4 242 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 HS2ST1Q7LGA3 356 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 CACNA2D4Q7Z3S7 1137 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 GOLGA5Q8TBA6 731 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 ANKRD7Q92527 254 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 GANQ9H2C0 597 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 BRCA2P51587 3418 aa24.69■■□□□ 1.54
CDX1-201ENST00000231656 PLEKP08567 350 aaPredicted RBP24.68■■□□□ 1.54
CDX1-201ENST00000231656 PSMC2P35998 433 aaKnown RBP24.68■■□□□ 1.54
CDX1-201ENST00000231656 PEX3P56589 373 aa24.68■■□□□ 1.54
CDX1-201ENST00000231656 BEX3Q00994 111 aa24.68■■□□□ 1.54
CDX1-201ENST00000231656 NAA30Q147X3 362 aaPredicted RBP24.68■■□□□ 1.54
CDX1-201ENST00000231656 FSCN1Q16658 493 aaKnown RBP24.68■■□□□ 1.54
CDX1-201ENST00000231656 BRDTQ58F21 947 aaPredicted RBP24.68■■□□□ 1.54
CDX1-201ENST00000231656 ZNF569Q5MCW4 686 aa24.68■■□□□ 1.54
CDX1-201ENST00000231656 SLC35C1Q96A29 364 aa24.68■■□□□ 1.54
CDX1-201ENST00000231656 C17orf75Q9HAS0 396 aa24.68■■□□□ 1.54
CDX1-201ENST00000231656 MYO1AQ9UBC5 1043 aa24.68■■□□□ 1.54
CDX1-201ENST00000231656 INSRRP14616 1297 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 FAM186BQ8IYM0 893 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 DNAJC5GQ8N7S2 189 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 TRAPPC12Q8WVT3 735 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 BSNDQ8WZ55 320 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 SYN2Q92777 582 aaPredicted RBP24.67■■□□□ 1.54
CDX1-201ENST00000231656 TMEM143Q96AN5 459 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 NUCKS1Q9H1E3 243 aaKnown RBP24.67■■□□□ 1.54
CDX1-201ENST00000231656 ST6GALNAC4Q9H4F1 302 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 HAUS4Q9H6D7 363 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 TRIM17Q9Y577 477 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 EVPLQ92817 2033 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 RARBP10826 455 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 GJA9P57773 515 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 RTP1P59025 263 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 APBA1Q02410 837 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 ZNF484Q5JVG2 852 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 SLC9A9Q8IVB4 645 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 LRRN4CLQ8ND94 238 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 CCDC42Q96M95 316 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 POLR3FQ9H1D9 316 aaPredicted RBP24.67■■□□□ 1.54
CDX1-201ENST00000231656 NLRC4Q9NPP4 1024 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 PLCB1Q9NQ66 1216 aa24.67■■□□□ 1.54
CDX1-201ENST00000231656 LCA5LO95447 670 aa24.66■■□□□ 1.54
CDX1-201ENST00000231656 F2P00734 622 aa24.66■■□□□ 1.54
CDX1-201ENST00000231656 C6orf222P0C671 652 aaPredicted RBP24.66■■□□□ 1.54
CDX1-201ENST00000231656 POLR2FP61218 127 aaKnown RBP24.66■■□□□ 1.54
CDX1-201ENST00000231656 MYBPC2Q14324 1141 aa24.66■■□□□ 1.54
CDX1-201ENST00000231656 DCAF17Q5H9S7 520 aaPredicted RBP24.66■■□□□ 1.54
CDX1-201ENST00000231656 EXOC8Q8IYI6 725 aa24.66■■□□□ 1.54
CDX1-201ENST00000231656 SLC35F6Q8N357 371 aa24.66■■□□□ 1.54
CDX1-201ENST00000231656 SLAIN1Q8ND83 568 aa24.66■■□□□ 1.54
CDX1-201ENST00000231656 KAT2BQ92831 832 aa24.66■■□□□ 1.54
CDX1-201ENST00000231656 UPF3AQ9H1J1 476 aaKnown RBP24.66■■□□□ 1.54
CDX1-201ENST00000231656 TRIM10Q9UDY6 481 aa24.66■■□□□ 1.54
CDX1-201ENST00000231656 MRFAP1Q9Y605 127 aa24.66■■□□□ 1.54
CDX1-201ENST00000231656 IGKV6-21A0A0C4DH24 114 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 MYADML2A6NDP7 307 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 ZNF263O14978 683 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 ARL2P36404 184 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 EIF4A3P38919 411 aaKnown RBP24.65■■□□□ 1.54
CDX1-201ENST00000231656 NPTX2P47972 431 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 DMP1Q13316 513 aaPredicted RBP24.65■■□□□ 1.54
CDX1-201ENST00000231656 HGSNATQ68CP4 663 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 TMEM174Q8WUU8 243 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 SLC16A4O15374 487 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 PGK1P00558 417 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 MYL3P08590 195 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 NCKAP1LP55160 1127 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 MAPK8IP2Q13387 824 aaPredicted RBP24.65■■□□□ 1.54
CDX1-201ENST00000231656 SYCP3Q8IZU3 236 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 SPIRE2Q8WWL2 714 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 NTPCRQ9BSD7 190 aaKnown RBP24.65■■□□□ 1.54
CDX1-201ENST00000231656 TMEM206Q9H813 350 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 PTCH2Q9Y6C5 1203 aa24.65■■□□□ 1.54
CDX1-201ENST00000231656 COL1A2P08123 1366 aa24.64■■□□□ 1.54
CDX1-201ENST00000231656 GTPBP10A4D1E9 387 aaKnown RBP24.64■■□□□ 1.53
CDX1-201ENST00000231656 RCCD1A6NED2 376 aa24.64■■□□□ 1.53
CDX1-201ENST00000231656 CCDC169A6NNP5 214 aa24.64■■□□□ 1.53
CDX1-201ENST00000231656 GAS2O43903 313 aaKnown RBP24.64■■□□□ 1.53
CDX1-201ENST00000231656 IPO7O95373 1038 aaKnown RBP24.64■■□□□ 1.53
CDX1-201ENST00000231656 SLC9A1P19634 815 aa24.64■■□□□ 1.53
CDX1-201ENST00000231656 PON1P27169 355 aa24.64■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms