RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 STK38Q15208 465 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 CDCA2Q69YH5 1023 aaPredicted RBP10.23□□□□□ -0.77
VPS35-206ENST00000565228 ZNF410Q86VK4 478 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 PHOSPHO2Q8TCD6 241 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 SP7Q8TDD2 431 aaPredicted RBP10.23□□□□□ -0.77
VPS35-206ENST00000565228 STAMQ92783 540 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 APBB2Q92870 758 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 TIFAQ96CG3 184 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 CPB2Q96IY4 423 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 EIF2AQ9BY44 585 aaKnown RBP10.23□□□□□ -0.77
VPS35-206ENST00000565228 FGFBP2Q9BYJ0 223 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 IKZF4Q9H2S9 585 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 GOLPH3LQ9H4A5 285 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 CERS4Q9HA82 394 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 MTMR10Q9NXD2 777 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 DNM3Q9UQ16 869 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 PCDHA11Q9Y5I1 949 aa10.23□□□□□ -0.77
VPS35-206ENST00000565228 PRRC2BQ5JSZ5 2229 aaKnown RBP10.22□□□□□ -0.77
VPS35-206ENST00000565228 TRANK1O15050 2925 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 LINC01553A4QN01 128 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 LPXNO60711 386 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 DGKIO75912 1065 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 ARF4P18085 180 aaPredicted RBP10.22□□□□□ -0.77
VPS35-206ENST00000565228 IBSPP21815 317 aaPredicted RBP10.22□□□□□ -0.77
VPS35-206ENST00000565228 UBA7P41226 1012 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 GIT2Q14161 759 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 BECN1Q14457 450 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 LONRF3Q496Y0 759 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 CLLU1OSQ5K130 101 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 NT5DC1Q5TFE4 455 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 EEF1DP3Q658K8 133 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 LRRC55Q6ZSA7 311 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 TMEM130Q8N3G9 435 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 PDILTQ8N807 584 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 USP38Q8NB14 1042 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 SMG8Q8ND04 991 aaKnown RBP10.22□□□□□ -0.77
VPS35-206ENST00000565228 TCP11Q8WWU5 503 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 LPPQ93052 612 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 DNAJC19Q96DA6 116 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 ZNF396Q96N95 335 aaPredicted RBP10.22□□□□□ -0.77
VPS35-206ENST00000565228 REEP2Q9BRK0 252 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 GCOM2Q9BZD3 368 aaPredicted RBP10.22□□□□□ -0.77
VPS35-206ENST00000565228 RAB34Q9BZG1 259 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 FZD8Q9H461 694 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 ZNF576Q9H609 170 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 AGPAT5Q9NUQ2 364 aa10.22□□□□□ -0.77
VPS35-206ENST00000565228 PLXNA4Q9HCM2 1894 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 ABLIM1O14639 778 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 GPR182O15218 404 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 GAS2O43903 313 aaKnown RBP10.21□□□□□ -0.77
VPS35-206ENST00000565228 CUTAO60888 179 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 AMHP03971 560 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 RPLP2P05387 115 aaKnown RBP10.21□□□□□ -0.77
VPS35-206ENST00000565228 SSBP05455 408 aaKnown RBP eCLIP10.21□□□□□ -0.77
VPS35-206ENST00000565228 GUCY2CP25092 1073 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 NPTX2P47972 431 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 KCNJ6P48051 423 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 SARSP49591 514 aaKnown RBP10.21□□□□□ -0.77
VPS35-206ENST00000565228 DNM2P50570 870 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 POU5F1BQ06416 359 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 RESP18Q5W5W9 173 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 SRGAP1Q7Z6B7 1085 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 GPBP1Q86WP2 473 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 ECHDC2Q86YB7 292 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 GRAMD1CQ8IYS0 662 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 GLIS3Q8NEA6 775 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 MCPH1Q8NEM0 835 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 RAD9AQ99638 391 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 C17orf80Q9BSJ5 609 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 HAPLN2Q9GZV7 340 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 HPSEQ9Y251 543 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 RBM19Q9Y4C8 960 aaKnown RBP10.21□□□□□ -0.77
VPS35-206ENST00000565228 HES2Q9Y543 173 aa10.21□□□□□ -0.77
VPS35-206ENST00000565228 MRPL42Q9Y6G3 142 aaKnown RBP10.21□□□□□ -0.77
VPS35-206ENST00000565228 LRRIQ4A6NIV6 560 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 INO80B-WBP1J3KQ70 363 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 ASAP2O43150 1006 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 TLL1O43897 1013 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 IGFBP6P24592 240 aaPredicted RBP10.2□□□□□ -0.78
VPS35-206ENST00000565228 ZNF131P52739 623 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 PEX3P56589 373 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 MXD4Q14582 209 aaPredicted RBP10.2□□□□□ -0.78
VPS35-206ENST00000565228 AGMOQ6ZNB7 445 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 SLC24A5Q71RS6 500 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 CATSPER4Q7RTX7 472 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 DEFB123Q8N688 67 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 LARP4BQ92615 738 aaKnown RBP10.2□□□□□ -0.78
VPS35-206ENST00000565228 HPS3Q969F9 1004 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 SCLT1Q96NL6 688 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 CASD1Q96PB1 797 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 CDX2Q99626 313 aaPredicted RBP10.2□□□□□ -0.78
VPS35-206ENST00000565228 JPH2Q9BR39 696 aaPredicted RBP10.2□□□□□ -0.78
VPS35-206ENST00000565228 FTHL17Q9BXU8 183 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 NFKBIZQ9BYH8 718 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 INO80BQ9C086 356 aaPredicted RBP10.2□□□□□ -0.78
VPS35-206ENST00000565228 NT5C3AQ9H0P0 336 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 PRDM12Q9H4Q4 367 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 MIOSQ9NXC5 875 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 ARHGAP28Q9P2N2 729 aa10.2□□□□□ -0.78
VPS35-206ENST00000565228 PIN4Q9Y237 131 aaKnown RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms