RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 KAT5Q92993 513 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 TMEM209Q96SK2 561 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 CGRRF1Q99675 332 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 LRFN3Q9BTN0 628 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 HAPLN2Q9GZV7 340 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 GREM2Q9H772 168 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 ZFP69BQ9UJL9 534 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 DAAM1Q9Y4D1 1078 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 PCDHGB6Q9Y5F9 930 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 A0A0A6YYK5 440 aaPredicted RBP9.29□□□□□ -0.92
NUP54-215ENST00000514313 NRP2O60462 931 aa9.29□□□□□ -0.92
NUP54-215ENST00000514313 CUTAO60888 179 aa9.29□□□□□ -0.92
NUP54-215ENST00000514313 ZNF280AP59817 542 aaPredicted RBP9.29□□□□□ -0.92
NUP54-215ENST00000514313 IL10RAQ13651 578 aa9.29□□□□□ -0.92
NUP54-215ENST00000514313 GLB1L2Q8IW92 636 aa9.29□□□□□ -0.92
NUP54-215ENST00000514313 KIAA0319LQ8IZA0 1049 aa9.29□□□□□ -0.92
NUP54-215ENST00000514313 OR2I1PQ8NGU4 316 aa9.29□□□□□ -0.92
NUP54-215ENST00000514313 HDAC10Q969S8 669 aa9.29□□□□□ -0.92
NUP54-215ENST00000514313 ZSWIM3Q96MP5 696 aa9.29□□□□□ -0.92
NUP54-215ENST00000514313 SOX7Q9BT81 388 aa9.29□□□□□ -0.92
NUP54-215ENST00000514313 NAA15Q9BXJ9 866 aaKnown RBP9.29□□□□□ -0.92
NUP54-215ENST00000514313 MAGEL2Q9UJ55 1249 aa9.29□□□□□ -0.92
NUP54-215ENST00000514313 IFRD1O00458 451 aaPredicted RBP9.28□□□□□ -0.92
NUP54-215ENST00000514313 NCAM1P13591 858 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 XPAP23025 273 aaPredicted RBP9.28□□□□□ -0.92
NUP54-215ENST00000514313 HTR1BP28222 390 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 GJA9P57773 515 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 ANTXR2P58335 489 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 FAM193AP78312 1265 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 MGAT5Q09328 741 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 DGKDQ16760 1214 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 KIAA0753Q2KHM9 967 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 OLFML2BQ68BL8 750 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 NPNTQ6UXI9 565 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 GJA10Q969M2 543 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 KLHL11Q9NVR0 708 aa9.28□□□□□ -0.92
NUP54-215ENST00000514313 HRKO00198 91 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 CYP2C8P10632 490 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 GSPT1P15170 499 aaKnown RBP9.27□□□□□ -0.93
NUP54-215ENST00000514313 NRG3P56975 720 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 MGAT2Q10469 447 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 SEMA5AQ13591 1074 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 MIGA2Q7L4E1 593 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 C11orf96Q7Z7L8 435 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 STK32CQ86UX6 486 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 STPG3Q8N7X2 389 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 BHMT2Q9H2M3 363 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 KCND1Q9NSA2 647 aa9.27□□□□□ -0.93
NUP54-215ENST00000514313 POLR3BQ9NW08 1133 aaPredicted RBP9.27□□□□□ -0.93
NUP54-215ENST00000514313 CREB3O43889 395 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 TMEM127O75204 238 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 GLI1P08151 1106 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 ITGA1P56199 1179 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 MAP3K12Q12852 859 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 ADAM9Q13443 819 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 RTP5Q14D33 572 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 GRAMD4Q6IC98 578 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 SWSAP1Q6NVH7 229 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 LMBR1LQ6UX01 489 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 ZNF605Q86T29 641 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 SMARCC2Q8TAQ2 1214 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 DYDC2Q96IM9 177 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 RBM12Q9NTZ6 932 aaKnown RBP9.26□□□□□ -0.93
NUP54-215ENST00000514313 DNAI1Q9UI46 699 aa9.26□□□□□ -0.93
NUP54-215ENST00000514313 CFAP20Q9Y6A4 193 aaKnown RBP9.26□□□□□ -0.93
NUP54-215ENST00000514313 PQBP1O60828 265 aaKnown RBP9.25□□□□□ -0.93
NUP54-215ENST00000514313 ATF2P15336 505 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 ADCY8P40145 1251 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 MAP2K6P52564 334 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 AGFG1P52594 562 aaKnown RBP9.25□□□□□ -0.93
NUP54-215ENST00000514313 NCKAP1LP55160 1127 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 DSC2Q02487 901 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 DHX8Q14562 1220 aaKnown RBP9.25□□□□□ -0.93
NUP54-215ENST00000514313 SEPT2Q15019 361 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 NOMO1Q15155 1222 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 LONRF1Q17RB8 773 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 ANO6Q4KMQ2 910 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 TOGARAM2Q6ZUX3 1019 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 ATG4DQ86TL0 474 aaPredicted RBP9.25□□□□□ -0.93
NUP54-215ENST00000514313 COL23A1Q86Y22 540 aaPredicted RBP9.25□□□□□ -0.93
NUP54-215ENST00000514313 BCL6BQ8N143 479 aaPredicted RBP9.25□□□□□ -0.93
NUP54-215ENST00000514313 RGMAQ96B86 450 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 APOL5Q9BWW9 433 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 ZNF552Q9H707 407 aaPredicted RBP9.25□□□□□ -0.93
NUP54-215ENST00000514313 PUF60Q9UHX1 559 aaKnown RBP9.25□□□□□ -0.93
NUP54-215ENST00000514313 L1RE1Q9UN81 338 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 POLHQ9Y253 713 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 STXBP5LQ9Y2K9 1186 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 PCDHA13Q9Y5I0 950 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 IRS2Q9Y4H2 1338 aa9.25□□□□□ -0.93
NUP54-215ENST00000514313 CAPN8A6NHC0 703 aa9.24□□□□□ -0.93
NUP54-215ENST00000514313 N4BP3O15049 544 aa9.24□□□□□ -0.93
NUP54-215ENST00000514313 FTLP02792 175 aaPredicted RBP9.24□□□□□ -0.93
NUP54-215ENST00000514313 IL12RB1P42701 662 aa9.24□□□□□ -0.93
NUP54-215ENST00000514313 AK2P54819 239 aa9.24□□□□□ -0.93
NUP54-215ENST00000514313 CNN3Q15417 329 aaKnown RBP9.24□□□□□ -0.93
NUP54-215ENST00000514313 DARS2Q6PI48 645 aaKnown RBP9.24□□□□□ -0.93
NUP54-215ENST00000514313 DPP8Q6V1X1 898 aaPredicted RBP9.24□□□□□ -0.93
NUP54-215ENST00000514313 CXXC5Q7LFL8 322 aaKnown RBP9.24□□□□□ -0.93
NUP54-215ENST00000514313 PPP1R14CQ8TAE6 165 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms