RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	ENPP3	O14638	875 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	EIF3D	O15371	548 aa	Known RBP eCLIP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	PPP1R37	O75864	691 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	RB1	P06400	928 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	ATP2A2	P16615	1042 aa	Known RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	ZSCAN20	P17040	1043 aa	Predicted RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	SYN1	P17600	705 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	PROZ	P22891	400 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	PAX3	P23760	479 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	ME1	P48163	572 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	CLCN3	P51790	818 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	FOSB	P53539	338 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	EPHB4	P54760	987 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	CCL23	P55773	120 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	MCCD1	P59942	119 aa	Predicted RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	IGBP1	P78318	339 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	GTF2B	Q00403	316 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	MDM2	Q00987	491 aa	Predicted RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	DNM1	Q05193	864 aa	Known RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	MBTD1	Q05BQ5	628 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	PSMD2	Q13200	908 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	CAPS	Q13938	189 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	SHH	Q15465	462 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	MAPK6	Q16659	721 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	AMHR2	Q16671	573 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	DCAF4L1	Q3SXM0	396 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	COBLL1	Q53SF7	1204 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	HABP4	Q5JVS0	413 aa	Known RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	RRAGB	Q5VZM2	374 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	PLA2G4F	Q68DD2	849 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	SHC4	Q6S5L8	630 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	CHRDL2	Q6WN34	429 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	STXBP4	Q6ZWJ1	553 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	SV2B	Q7L1I2	683 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	ZNF598	Q86UK7	904 aa	Known RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	FAM228A	Q86W67	206 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	HERC6	Q8IVU3	1022 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	HACE1	Q8IYU2	909 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	RNF149	Q8NC42	400 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	SPATA20	Q8TB22	786 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	PIGO	Q8TEQ8	1089 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	TRAPPC12	Q8WVT3	735 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	TMEM40	Q8WWA1	233 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	NLRP7	Q8WX94	980 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	DNAJC19	Q96DA6	116 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	PGBD4	Q96DM1	585 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	SCLY	Q96I15	445 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	IPO9	Q96P70	1041 aa	Known RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	FIZ1	Q96SL8	496 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	C7orf25	Q9BPX7	421 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	STRA6	Q9BX79	667 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	MRPL9	Q9BYD2	267 aa	Known RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	TRIM9	Q9C026	710 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	AGO3	Q9H9G7	860 aa	Known RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	SUGCT	Q9HAC7	445 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	TBC1D7	Q9P0N9	293 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	KANSL3	Q9P2N6	904 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	KCNH3	Q9ULD8	1083 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	ST3GAL5	Q9UNP4	418 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	COLQ	Q9Y215	455 aa	Predicted RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	TNFSF13B	Q9Y275	285 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	NOC2L	Q9Y3T9	749 aa	Known RBP	5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	STYXL1	Q9Y6J8	313 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525	BRWD1	Q9NSI6	2320 aa		5.62	□□□□□ -1.51
HDAC6-223	ENST00000480525		A0A087WZ62	844 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525		E9PMD0	336 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	N4BP3	O15049	544 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	SORBS3	O60504	671 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	TSPAN1	O60635	241 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	USO1	O60763	962 aa	Known RBP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	DTNB	O60941	627 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	TOM1L1	O75674	476 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	DGKI	O75912	1065 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	ERLIN2	O94905	339 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	KIF20A	O95235	890 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	VTN	P04004	478 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	ADRB2	P07550	413 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	GHR	P10912	638 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	NCL	P19338	710 aa	Known RBP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	MARCKS	P29966	332 aa	Predicted RBP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	CDC25A	P30304	524 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	HOXA11	P31270	313 aa	Predicted RBP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	CD52	P31358	61 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	PPP1R2	P41236	205 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	STAT6	P42226	847 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	NPTX2	P47972	431 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	UBE3A	Q05086	875 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	GRIN1	Q05586	938 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	FAM160A1	Q05DH4	1040 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	DRP2	Q13474	957 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	GIT2	Q14161	759 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	MYBPC2	Q14324	1141 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	KCNB1	Q14721	858 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	KARS	Q15046	597 aa	Known RBP	5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	NFIL3	Q16649	462 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	BMT2	Q1RMZ1	405 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	KIZ	Q2M2Z5	673 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	ARSH	Q5FYA8	562 aa		5.61	□□□□□ -1.51
HDAC6-223	ENST00000480525	NT5DC1	Q5TFE4	455 aa		5.61	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms