RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 TMEM134Q9H6X4 195 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 EXOC7Q9UPT5 735 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 DNM1LO00429 736 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 CALUO43852 315 aaPredicted RBP25.29■■□□□ 1.64
CPSF4-204ENST00000436336 GJB1P08034 283 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 EDRF1Q3B7T1 1238 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 CDCA2Q69YH5 1023 aaPredicted RBP25.29■■□□□ 1.64
CPSF4-204ENST00000436336 SYCP3Q8IZU3 236 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 CSGALNACT2Q8N6G5 542 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 NOC3LQ8WTT2 800 aaKnown RBP25.29■■□□□ 1.64
CPSF4-204ENST00000436336 GBP3Q9H0R5 595 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 C2orf40Q9H1Z8 148 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 OGDHLQ9ULD0 1010 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 PHF24Q9UPV7 400 aa25.29■■□□□ 1.64
CPSF4-204ENST00000436336 TGFB1I1O43294 461 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 SRGAP2CP0DJJ0 459 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 EFNA5P52803 228 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 CDC42EP1Q00587 391 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 PTPN11Q06124 597 aaPredicted RBP25.28■■□□□ 1.64
CPSF4-204ENST00000436336 ITGA7Q13683 1181 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 FAM47CQ5HY64 1035 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 ZBTB8OSQ8IWT0 167 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 VTI1AQ96AJ9 217 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 NLRP4Q96MN2 994 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 NFKBIZQ9BYH8 718 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 SAMSN1Q9NSI8 373 aaKnown RBP25.28■■□□□ 1.64
CPSF4-204ENST00000436336 GRIN2DO15399 1336 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 PHLPP2Q6ZVD8 1323 aa25.28■■□□□ 1.64
CPSF4-204ENST00000436336 ZNF18P17022 549 aa25.27■■□□□ 1.64
CPSF4-204ENST00000436336 ZNF200P98182 395 aaPredicted RBP25.27■■□□□ 1.64
CPSF4-204ENST00000436336 HS2ST1Q7LGA3 356 aa25.27■■□□□ 1.64
CPSF4-204ENST00000436336 GOLGA5Q8TBA6 731 aa25.27■■□□□ 1.64
CPSF4-204ENST00000436336 SRRTQ9BXP5 876 aaKnown RBP25.27■■□□□ 1.64
CPSF4-204ENST00000436336 THAP9Q9H5L6 903 aa25.27■■□□□ 1.64
CPSF4-204ENST00000436336 A0A1W2PQ45 241 aaPredicted RBP25.26■■□□□ 1.63
CPSF4-204ENST00000436336 A0A1W2PQY0 241 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 K7ERI5 159 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 FGFR1OPO95684 399 aaKnown RBP25.26■■□□□ 1.63
CPSF4-204ENST00000436336 VTNP04004 478 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 SNRPFP62306 86 aaKnown RBP25.26■■□□□ 1.63
CPSF4-204ENST00000436336 FKBP3Q00688 224 aaKnown RBP25.26■■□□□ 1.63
CPSF4-204ENST00000436336 STRN3Q13033 797 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 CDKAL1Q5VV42 579 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 GDF6Q6KF10 455 aaPredicted RBP25.26■■□□□ 1.63
CPSF4-204ENST00000436336 TAF2Q6P1X5 1199 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 RUFY4Q6ZNE9 571 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 TAS1R3Q7RTX0 852 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 CGNQ9P2M7 1197 aaKnown RBP25.26■■□□□ 1.63
CPSF4-204ENST00000436336 PTENP60484 403 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 NFIL3Q16649 462 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 ZNF410Q86VK4 478 aa25.26■■□□□ 1.63
CPSF4-204ENST00000436336 IFNLR1Q8IU57 520 aaPredicted RBP25.26■■□□□ 1.63
CPSF4-204ENST00000436336 FAM49AQ9H0Q0 323 aaPredicted RBP25.26■■□□□ 1.63
CPSF4-204ENST00000436336 PHKA2P46019 1235 aa25.25■■□□□ 1.63
CPSF4-204ENST00000436336 GPC3P51654 580 aa25.25■■□□□ 1.63
CPSF4-204ENST00000436336 ZC3H3Q8IXZ2 948 aaKnown RBP25.25■■□□□ 1.63
CPSF4-204ENST00000436336 NME8Q8N427 588 aa25.25■■□□□ 1.63
CPSF4-204ENST00000436336 STARD7Q9NQZ5 370 aa25.25■■□□□ 1.63
CPSF4-204ENST00000436336 LRRC55Q6ZSA7 311 aa25.24■■□□□ 1.63
CPSF4-204ENST00000436336 ZNF710Q8N1W2 664 aa25.24■■□□□ 1.63
CPSF4-204ENST00000436336 DNAJB3Q8WWF6 145 aa25.24■■□□□ 1.63
CPSF4-204ENST00000436336 CEP63Q96MT8 703 aa25.24■■□□□ 1.63
CPSF4-204ENST00000436336 CRISPLD2Q9H0B8 497 aa25.24■■□□□ 1.63
CPSF4-204ENST00000436336 CCDC113Q9H0I3 377 aa25.24■■□□□ 1.63
CPSF4-204ENST00000436336 IKZF4Q9H2S9 585 aa25.24■■□□□ 1.63
CPSF4-204ENST00000436336 IFT122Q9HBG6 1241 aa25.24■■□□□ 1.63
CPSF4-204ENST00000436336 AGPAT3Q9NRZ7 376 aa25.24■■□□□ 1.63
CPSF4-204ENST00000436336 A0A087WZ62 844 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 CDK11BP21127 795 aaKnown RBP25.23■■□□□ 1.63
CPSF4-204ENST00000436336 RPL13P26373 211 aaKnown RBP25.23■■□□□ 1.63
CPSF4-204ENST00000436336 NLRP11P59045 1033 aaKnown RBP25.23■■□□□ 1.63
CPSF4-204ENST00000436336 FAM114A1Q8IWE2 563 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 FDXACB1Q9BRP7 624 aaPredicted RBP25.23■■□□□ 1.63
CPSF4-204ENST00000436336 SEZ6LQ9BYH1 1024 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 A0A0U1RQG5 324 aaPredicted RBP25.23■■□□□ 1.63
CPSF4-204ENST00000436336 SGPL1O95470 568 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 NR3C1P04150 777 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 RPLP2P05387 115 aaKnown RBP25.23■■□□□ 1.63
CPSF4-204ENST00000436336 ATP1A3P13637 1013 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 NR2F2P24468 414 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 SPAG1Q07617 926 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 ADAM9Q13443 819 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 MAPK6Q16659 721 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 HSP90AA4PQ58FG1 418 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 SARM1Q6SZW1 724 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 SERINC5Q86VE9 423 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 SLC43A3Q8NBI5 491 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 TMEM174Q8WUU8 243 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 NLRP7Q8WX94 980 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 ZNF668Q96K58 619 aaPredicted RBP25.23■■□□□ 1.63
CPSF4-204ENST00000436336 PRDM10Q9NQV6 1147 aa25.23■■□□□ 1.63
CPSF4-204ENST00000436336 CETN3O15182 167 aa25.22■■□□□ 1.63
CPSF4-204ENST00000436336 CLIC2O15247 247 aa25.22■■□□□ 1.63
CPSF4-204ENST00000436336 PIGRP01833 764 aa25.22■■□□□ 1.63
CPSF4-204ENST00000436336 PLCB2Q00722 1185 aa25.22■■□□□ 1.63
CPSF4-204ENST00000436336 MYBPC2Q14324 1141 aa25.22■■□□□ 1.63
CPSF4-204ENST00000436336 IRF2BP1Q8IU81 584 aa25.22■■□□□ 1.63
CPSF4-204ENST00000436336 C12orf56Q8IXR9 622 aa25.22■■□□□ 1.63
CPSF4-204ENST00000436336 U2AF1L4Q8WU68 220 aaKnown RBP25.22■■□□□ 1.63
CPSF4-204ENST00000436336 MBTD1Q05BQ5 628 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms