RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 PSEN2P49810 448 aa29.4■■■□□ 2.3
MSX1-201ENST00000382723 MAP2K1Q02750 393 aaPredicted RBP29.4■■■□□ 2.3
MSX1-201ENST00000382723 NFIL3Q16649 462 aa29.4■■■□□ 2.3
MSX1-201ENST00000382723 MIIPQ5JXC2 388 aa29.4■■■□□ 2.3
MSX1-201ENST00000382723 ZNF668Q96K58 619 aaPredicted RBP29.4■■■□□ 2.3
MSX1-201ENST00000382723 PCIF1Q9H4Z3 704 aa29.4■■■□□ 2.3
MSX1-201ENST00000382723 SPC25Q9HBM1 224 aa29.4■■■□□ 2.3
MSX1-201ENST00000382723 SMIM10L2AP0DMW4 78 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 SMIM10L2BP0DMW5 78 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 HSPA6P17066 643 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 MARCH8Q5T0T0 291 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 BICD1Q96G01 975 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 ANKRD63C9JTQ0 380 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 PURAQ00577 322 aaKnown RBP29.39■■■□□ 2.3
MSX1-201ENST00000382723 STRN3Q13033 797 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 MAN2A1Q16706 1144 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 RNF149Q8NC42 400 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 NLRP4Q96MN2 994 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 CBWD1Q9BRT8 395 aa29.39■■■□□ 2.3
MSX1-201ENST00000382723 K7ERI5 159 aa29.38■■■□□ 2.29
MSX1-201ENST00000382723 MYCNP04198 464 aaPredicted RBP29.38■■■□□ 2.29
MSX1-201ENST00000382723 EPB41P11171 864 aaKnown RBP29.38■■■□□ 2.29
MSX1-201ENST00000382723 ABCD1P33897 745 aa29.38■■■□□ 2.29
MSX1-201ENST00000382723 VWA3BQ502W6 1294 aa29.38■■■□□ 2.29
MSX1-201ENST00000382723 SPECC1LQ69YQ0 1117 aa29.38■■■□□ 2.29
MSX1-201ENST00000382723 PXYLP1Q8TE99 480 aa29.38■■■□□ 2.29
MSX1-201ENST00000382723 LMBR1Q8WVP7 490 aa29.38■■■□□ 2.29
MSX1-201ENST00000382723 XPNPEP3Q9NQH7 507 aa29.38■■■□□ 2.29
MSX1-201ENST00000382723 DMAC2Q9NW81 257 aa29.38■■■□□ 2.29
MSX1-201ENST00000382723 USP20Q9Y2K6 914 aa29.38■■■□□ 2.29
MSX1-201ENST00000382723 MARSP56192 900 aaKnown RBP29.37■■■□□ 2.29
MSX1-201ENST00000382723 ARMCX5Q6P1M9 558 aa29.37■■■□□ 2.29
MSX1-201ENST00000382723 ZNF830Q96NB3 372 aaPredicted RBP29.37■■■□□ 2.29
MSX1-201ENST00000382723 UPF3AQ9H1J1 476 aaKnown RBP29.37■■■□□ 2.29
MSX1-201ENST00000382723 CGNQ9P2M7 1197 aaKnown RBP29.37■■■□□ 2.29
MSX1-201ENST00000382723 IMPACTQ9P2X3 320 aa29.37■■■□□ 2.29
MSX1-201ENST00000382723 ARMCX3Q9UH62 379 aaPredicted RBP29.37■■■□□ 2.29
MSX1-201ENST00000382723 CENPFP49454 3210 aa29.37■■■□□ 2.29
MSX1-201ENST00000382723 RRN3P2A6NIE6 340 aa29.37■■■□□ 2.29
MSX1-201ENST00000382723 HNRNPDLO14979 420 aaKnown RBP29.37■■■□□ 2.29
MSX1-201ENST00000382723 SLC16A3O15427 465 aaKnown RBP29.37■■■□□ 2.29
MSX1-201ENST00000382723 EXOC3O60645 756 aa29.37■■■□□ 2.29
MSX1-201ENST00000382723 PBX1P40424 430 aa29.37■■■□□ 2.29
MSX1-201ENST00000382723 NDST4Q9H3R1 872 aa29.37■■■□□ 2.29
MSX1-201ENST00000382723 AKT3Q9Y243 479 aa29.37■■■□□ 2.29
MSX1-201ENST00000382723 FRMD4BQ9Y2L6 1034 aa29.37■■■□□ 2.29
MSX1-201ENST00000382723 TRIM17Q9Y577 477 aa29.37■■■□□ 2.29
MSX1-201ENST00000382723 HAS3O00219 553 aa29.36■■■□□ 2.29
MSX1-201ENST00000382723 TMOD1P28289 359 aa29.36■■■□□ 2.29
MSX1-201ENST00000382723 PSMC2P35998 433 aaKnown RBP29.36■■■□□ 2.29
MSX1-201ENST00000382723 MAP3K21Q5TCX8 1036 aa29.36■■■□□ 2.29
MSX1-201ENST00000382723 FRMD5Q7Z6J6 570 aa29.36■■■□□ 2.29
MSX1-201ENST00000382723 SLC9A9Q8IVB4 645 aa29.36■■■□□ 2.29
MSX1-201ENST00000382723 TRIM59Q8IWR1 403 aa29.36■■■□□ 2.29
MSX1-201ENST00000382723 FAM186BQ8IYM0 893 aa29.36■■■□□ 2.29
MSX1-201ENST00000382723 LINC01465Q8N7H1 131 aa29.36■■■□□ 2.29
MSX1-201ENST00000382723 KATNAL1Q9BW62 490 aa29.36■■■□□ 2.29
MSX1-201ENST00000382723 NRCAMQ92823 1304 aa29.36■■■□□ 2.29
MSX1-201ENST00000382723 SNRPFP62306 86 aaKnown RBP29.35■■■□□ 2.29
MSX1-201ENST00000382723 TFDP1Q14186 410 aa29.35■■■□□ 2.29
MSX1-201ENST00000382723 ARID5BQ14865 1188 aa29.35■■■□□ 2.29
MSX1-201ENST00000382723 SLC39A4Q6P5W5 647 aa29.35■■■□□ 2.29
MSX1-201ENST00000382723 PPP1R16BQ96T49 567 aa29.35■■■□□ 2.29
MSX1-201ENST00000382723 HSPBP1Q9NZL4 362 aa29.35■■■□□ 2.29
MSX1-201ENST00000382723 UTP18Q9Y5J1 556 aaKnown RBP eCLIP29.35■■■□□ 2.29
MSX1-201ENST00000382723 SCP2P22307 547 aa29.35■■■□□ 2.29
MSX1-201ENST00000382723 NFRKBQ6P4R8 1299 aa29.35■■■□□ 2.29
MSX1-201ENST00000382723 RDH13Q8NBN7 331 aa29.35■■■□□ 2.29
MSX1-201ENST00000382723 TMEM134Q9H6X4 195 aa29.35■■■□□ 2.29
MSX1-201ENST00000382723 PHLPP2Q6ZVD8 1323 aa29.34■■■□□ 2.29
MSX1-201ENST00000382723 ASAP2O43150 1006 aa29.34■■■□□ 2.29
MSX1-201ENST00000382723 KPNA6O60684 536 aa29.34■■■□□ 2.29
MSX1-201ENST00000382723 VTNP04004 478 aa29.34■■■□□ 2.29
MSX1-201ENST00000382723 ADSSP30520 456 aa29.34■■■□□ 2.29
MSX1-201ENST00000382723 LIG4P49917 911 aa29.34■■■□□ 2.29
MSX1-201ENST00000382723 FKBP15Q5T1M5 1219 aa29.34■■■□□ 2.29
MSX1-201ENST00000382723 CXCL17Q6UXB2 119 aa29.34■■■□□ 2.29
MSX1-201ENST00000382723 ZBTB8OSQ8IWT0 167 aa29.34■■■□□ 2.29
MSX1-201ENST00000382723 C12orf56Q8IXR9 622 aa29.34■■■□□ 2.29
MSX1-201ENST00000382723 ADAMTS4O75173 837 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 INHAP05111 366 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 EFNA5P52803 228 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 MYBPC2Q14324 1141 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 CDCA2Q69YH5 1023 aaPredicted RBP29.33■■■□□ 2.29
MSX1-201ENST00000382723 SLAIN1Q8ND83 568 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 MTG1Q9BT17 334 aaPredicted RBP29.33■■■□□ 2.29
MSX1-201ENST00000382723 METTL14Q9HCE5 456 aaKnown RBP29.33■■■□□ 2.29
MSX1-201ENST00000382723 PTCH2Q9Y6C5 1203 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 ZEB2O60315 1214 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 HS1BP3Q53T59 392 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 XXYLT1Q8NBI6 393 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 ZSWIM2Q8NEG5 633 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 KCNN1Q92952 543 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 MAP7D2Q96T17 732 aa29.33■■■□□ 2.29
MSX1-201ENST00000382723 DDX20Q9UHI6 824 aaKnown RBP29.33■■■□□ 2.29
MSX1-201ENST00000382723 GRK4P32298 578 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 PRMT2P55345 433 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 HIC1Q14526 733 aa29.32■■■□□ 2.28
MSX1-201ENST00000382723 DCAF17Q5H9S7 520 aaPredicted RBP29.32■■■□□ 2.28
MSX1-201ENST00000382723 C7orf31Q8N865 590 aa29.32■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms