RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 RAD21L1Q9H4I0 556 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 DDX56Q9NY93 547 aaKnown RBP14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 SGSM2O43147 1006 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 TRIP13Q15645 432 aaPredicted RBP14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 TRIM16LQ309B1 348 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 FAM133AQ8N9E0 248 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 MLNP12872 115 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 CSE1LP55060 971 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 MIF4GDA9UHW6 222 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 KLHL18O94889 574 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 EME1Q96AY2 570 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 ZWILCHQ9H900 591 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 CYP4F11Q9HBI6 524 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 C19orf18Q8NEA5 215 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 CENPTQ96BT3 561 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 PPP1R2P1Q96PQ5 205 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 XPO6Q96QU8 1125 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 RWDD2AQ9UIY3 292 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 FASTKD1Q53R41 847 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 WWP1Q9H0M0 922 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 GADD45BO75293 160 aaPredicted RBP14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 GSPT1P15170 499 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 FAM45AQ8TCE6 357 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 YIPF2Q9BWQ6 316 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 NRBP1Q9UHY1 535 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 HPS5Q9UPZ3 1129 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 YTHDC2Q9H6S0 1430 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 AKAP10O43572 662 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 TALDO1P37837 337 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 HSPA9P38646 679 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 DNAL1Q4LDG9 190 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 ATAD3BQ5T9A4 648 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 PNMA1Q8ND90 353 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 URGCPQ8TCY9 931 aa14.76□□□□□ -0.05
CCDC88A-201ENST00000263630 USP14P54578 494 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 MICALL2Q8IY33 904 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 BABAM1Q9NWV8 329 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 FYNP06241 537 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 PIK3R5Q8WYR1 880 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 MXI1P50539 228 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 TIMM10P62072 90 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 MOSPD2Q8NHP6 518 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 AMNQ9BXJ7 453 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 IMPAD1Q9NX62 359 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 GON4LQ3T8J9 2241 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 ZNF839A8K0R7 811 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 PPIP5K2O43314 1243 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 RBL2Q08999 1139 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 FOXP1Q9H334 677 aaPredicted RBP14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 MYO1GB0I1T2 1018 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 KRT6AP02538 564 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 KRT6BP04259 564 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 CPA1P15085 419 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 KRT6CP48668 564 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 MMRN1Q13201 1228 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 HEATR6Q6AI08 1181 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 P3H2Q8IVL5 708 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 PANX2Q96RD6 677 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 RRAGDQ9NQL2 400 aaPredicted RBP14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 CACNA2D2Q9NY47 1150 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 AP4S1Q9Y587 144 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 PPP6R2O75170 966 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 HSPA13P48723 471 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 MFSD14BQ5SR56 506 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 RUSC2Q8N2Y8 1516 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 CCDC195A0A1B0GUA6 201 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 hCG_1984214I3L0E3 225 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 INPP5DQ92835 1189 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 FAM162AQ96A26 154 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 ANXA11P50995 505 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 TSPAN17Q96FV3 270 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 FAM227BQ96M60 508 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 UBAP1Q9NZ09 502 aa14.75□□□□□ -0.05
CCDC88A-201ENST00000263630 SORBS3O60504 671 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 ICA1Q05084 483 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 LRRC63Q05C16 580 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 RHPN2Q8IUC4 686 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 THAP9Q9H5L6 903 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 TUFT1Q9NNX1 390 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 PEX1O43933 1283 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 NEK10Q6ZWH5 1172 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 FBXL5Q9UKA1 691 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 RGS5O15539 181 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 SF3B3Q15393 1217 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 OLFML2BQ68BL8 750 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 FAM89AQ96GI7 184 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 LMBRD1Q9NUN5 540 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 DCTN4Q9UJW0 460 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 PPP2R2AP63151 447 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 VPS37AQ8NEZ2 397 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 ABCC1P33527 1531 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 IKBKBO14920 756 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 TTC39CQ8N584 583 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 MB21D1Q8N884 522 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 POLIQ9UNA4 740 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 CYP19A1P11511 503 aaPredicted RBP14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 PGM1P36871 562 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 CUL4AQ13619 759 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms