RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PHF20Q9BVI0 1012 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 KCNMB3Q9NPA1 279 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 PDRG1Q9NUG6 133 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 RNF19AQ9NV58 838 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 SPG21Q9NZD8 308 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 SEPT9Q9UHD8 586 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-211ENST00000597968 EVPLQ92817 2033 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 CCDC194A0A1B0GVG4 234 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 ZNF623O75123 536 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 STBD1O95210 358 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 TDP2O95551 362 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 NEFLP07196 543 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 P4HBP07237 508 aaKnown RBP15.28■□□□□ 0.04
TRIM28-211ENST00000597968 QARSP47897 775 aaKnown RBP15.28■□□□□ 0.04
TRIM28-211ENST00000597968 ALDH7A1P49419 539 aaKnown RBP15.28■□□□□ 0.04
TRIM28-211ENST00000597968 ERVFC1P60507 584 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 CLUL1Q15846 466 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 LRRC55Q6ZSA7 311 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 NEK8Q86SG6 692 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 RBM23Q86U06 439 aaKnown RBP15.28■□□□□ 0.04
TRIM28-211ENST00000597968 SLC7A3Q8WY07 619 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 WASF1Q92558 559 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 EDAQ92838 391 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 TCF25Q9BQ70 676 aa15.28■□□□□ 0.04
TRIM28-211ENST00000597968 PHKA2P46019 1235 aa15.27■□□□□ 0.04
TRIM28-211ENST00000597968 SMC1AQ14683 1233 aaKnown RBP15.27■□□□□ 0.04
TRIM28-211ENST00000597968 MTERF2Q49AM1 385 aa15.27■□□□□ 0.04
TRIM28-211ENST00000597968 CASP10Q92851 521 aa15.27■□□□□ 0.04
TRIM28-211ENST00000597968 PRRX2Q99811 253 aa15.27■□□□□ 0.04
TRIM28-211ENST00000597968 SLKQ9H2G2 1235 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-211ENST00000597968 ENTPD7Q9NQZ7 604 aa15.27■□□□□ 0.04
TRIM28-211ENST00000597968 BARX2Q9UMQ3 279 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-211ENST00000597968 USP15Q9Y4E8 981 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-211ENST00000597968 IRAK3Q9Y616 596 aa15.27■□□□□ 0.04
TRIM28-211ENST00000597968 MYO7AQ13402 2215 aa15.27■□□□□ 0.03
TRIM28-211ENST00000597968 ASAP2O43150 1006 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 PFKFB2O60825 505 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 IBSPP21815 317 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-211ENST00000597968 RFC5P40937 340 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 POLGP54098 1239 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-211ENST00000597968 ITIH3Q06033 890 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 INF2Q27J81 1249 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 LETM2Q2VYF4 491 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 TPRNQ4KMQ1 711 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 CLLU1OSQ5K130 101 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 ANKRD54Q6NXT1 300 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 ANO5Q75V66 913 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 OTUD6AQ7L8S5 288 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 TMC7Q7Z402 723 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 C4orf19Q8IY42 314 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 SLFN12Q8IYM2 578 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 SLC39A11Q8N1S5 342 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 MRPL43Q8N983 215 aaKnown RBP15.26■□□□□ 0.03
TRIM28-211ENST00000597968 PGBD4Q96DM1 585 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 NECTIN4Q96NY8 510 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 LARP6Q9BRS8 491 aaKnown RBP15.26■□□□□ 0.03
TRIM28-211ENST00000597968 CYP26B1Q9NR63 512 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 SUCLA2Q9P2R7 463 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-211ENST00000597968 PLXNA4Q9HCM2 1894 aa15.26■□□□□ 0.03
TRIM28-211ENST00000597968 A0A087WZ62 844 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 DDX11L8A8MPP1 907 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 PER2O15055 1255 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 CSPG5O95196 566 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 SCRN1Q12765 414 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 EPHA7Q15375 998 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 TWF2Q6IBS0 349 aaKnown RBP15.25■□□□□ 0.03
TRIM28-211ENST00000597968 GLB1LQ6UWU2 654 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 SRGAP1Q7Z6B7 1085 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 TCP11Q8WWU5 503 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 TMEM169Q96HH4 297 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 FDXACB1Q9BRP7 624 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-211ENST00000597968 S1PR5Q9H228 398 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 DHX33Q9H6R0 707 aaKnown RBP15.25■□□□□ 0.03
TRIM28-211ENST00000597968 BRMS1Q9HCU9 246 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 FAM105AQ9NUU6 356 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 KANSL3Q9P2N6 904 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 DAXXQ9UER7 740 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-211ENST00000597968 MUTYHQ9UIF7 546 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 VAV3Q9UKW4 847 aa15.25■□□□□ 0.03
TRIM28-211ENST00000597968 WDR81Q562E7 1941 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 BAG4O95429 457 aaKnown RBP15.24■□□□□ 0.03
TRIM28-211ENST00000597968 STK3Q13188 491 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 DRP2Q13474 957 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 PLPP4Q5VZY2 271 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 CATSPER4Q7RTX7 472 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 RHPN2Q8IUC4 686 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 CNNM3Q8NE01 707 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 VN1R2Q8NFZ6 395 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 HELQQ8TDG4 1101 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 ZSWIM4Q9H7M6 989 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 IFT122Q9HBG6 1241 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 HCSTQ9UBK5 93 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 PIN4Q9Y237 131 aaKnown RBP15.24■□□□□ 0.03
TRIM28-211ENST00000597968 NR2E1Q9Y466 385 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 COL4A3BPQ9Y5P4 624 aa15.24■□□□□ 0.03
TRIM28-211ENST00000597968 TRIOO75962 3097 aa15.23■□□□□ 0.03
TRIM28-211ENST00000597968 CNTNAP2Q9UHC6 1331 aa15.23■□□□□ 0.03
TRIM28-211ENST00000597968 SLC37A4O43826 429 aa15.23■□□□□ 0.03
TRIM28-211ENST00000597968 MARCH6O60337 910 aa15.23■□□□□ 0.03
TRIM28-211ENST00000597968 CCNT1O60563 726 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms