RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 RCOR1Q9UKL0 485 aa28.58■■■□□ 2.17
TRIM28-204ENST00000594806 TMEM265A0A087WTH1 108 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 GLRA2P23416 452 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 DDIT3P35638 169 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 PTENP60484 403 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 KRT85P78386 507 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 PPP2R5AQ15172 486 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 FAM102BQ5T8I3 360 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 FAM109BQ6ICB4 259 aaPredicted RBP28.57■■■□□ 2.16
TRIM28-204ENST00000594806 RINT1Q6NUQ1 792 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 TOP1MTQ969P6 601 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 EPSTI1Q96J88 318 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 ZNF668Q96K58 619 aaPredicted RBP28.57■■■□□ 2.16
TRIM28-204ENST00000594806 CHST12Q9NRB3 414 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 PTPRSQ13332 1948 aa28.57■■■□□ 2.16
TRIM28-204ENST00000594806 GJB5O95377 273 aa28.56■■■□□ 2.16
TRIM28-204ENST00000594806 PLA2G4BP0C869 781 aa28.56■■■□□ 2.16
TRIM28-204ENST00000594806 ZSCAN20P17040 1043 aaPredicted RBP28.56■■■□□ 2.16
TRIM28-204ENST00000594806 KARSQ15046 597 aaKnown RBP28.56■■■□□ 2.16
TRIM28-204ENST00000594806 C1orf186Q6ZWK4 172 aa28.56■■■□□ 2.16
TRIM28-204ENST00000594806 MYOCDQ8IZQ8 938 aa28.56■■■□□ 2.16
TRIM28-204ENST00000594806 ASAP3Q8TDY4 903 aa28.56■■■□□ 2.16
TRIM28-204ENST00000594806 PLIN2Q99541 437 aa28.56■■■□□ 2.16
TRIM28-204ENST00000594806 PBX4Q9BYU1 374 aa28.56■■■□□ 2.16
TRIM28-204ENST00000594806 STK17AQ9UEE5 414 aa28.56■■■□□ 2.16
TRIM28-204ENST00000594806 KCNG1Q9UIX4 513 aa28.56■■■□□ 2.16
TRIM28-204ENST00000594806 GRXCR1A8MXD5 290 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 PLCG1P19174 1290 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 GUCY2CP25092 1073 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 SLC12A3P55017 1021 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 SPECC1Q5M775 1068 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 MAEAQ7L5Y9 396 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 LRCH3Q96II8 777 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 ZBED2Q9BTP6 218 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 C17orf75Q9HAS0 396 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 RGS18Q9NS28 235 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 GBF1Q92538 1859 aa28.55■■■□□ 2.16
TRIM28-204ENST00000594806 TCHHQ07283 1943 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 DENND3A2RUS2 1198 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 DNAJB2P25686 324 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 CAPSQ13938 189 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 DSC3Q14574 896 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 CCDC73Q6ZRK6 1079 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 USP49Q70CQ1 688 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 RTN4RL1Q86UN2 441 aaPredicted RBP28.54■■■□□ 2.16
TRIM28-204ENST00000594806 IFT74Q96LB3 600 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 DRC1Q96MC2 740 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 RAD9AQ99638 391 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 ADAM2Q99965 735 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 GPRC5CQ9NQ84 441 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 DACT1Q9NYF0 836 aa28.54■■■□□ 2.16
TRIM28-204ENST00000594806 SSBP05455 408 aaKnown RBP eCLIP28.53■■■□□ 2.16
TRIM28-204ENST00000594806 STAG3L1P0CL83 205 aa28.53■■■□□ 2.16
TRIM28-204ENST00000594806 RRAGBQ5VZM2 374 aa28.53■■■□□ 2.16
TRIM28-204ENST00000594806 SLC24A5Q71RS6 500 aa28.53■■■□□ 2.16
TRIM28-204ENST00000594806 CATSPER4Q7RTX7 472 aa28.53■■■□□ 2.16
TRIM28-204ENST00000594806 LINC01599Q8WXQ3 324 aa28.53■■■□□ 2.16
TRIM28-204ENST00000594806 RAD54LQ92698 747 aa28.53■■■□□ 2.16
TRIM28-204ENST00000594806 TIFAQ96CG3 184 aa28.53■■■□□ 2.16
TRIM28-204ENST00000594806 SCAND2PQ9GZW5 306 aaPredicted RBP28.53■■■□□ 2.16
TRIM28-204ENST00000594806 C2orf40Q9H1Z8 148 aa28.53■■■□□ 2.16
TRIM28-204ENST00000594806 BLOC1S4Q9NUP1 217 aa28.53■■■□□ 2.16
TRIM28-204ENST00000594806 CIZ1Q9ULV3 898 aaPredicted RBP28.53■■■□□ 2.16
TRIM28-204ENST00000594806 INSL6Q9Y581 213 aa28.53■■■□□ 2.16
TRIM28-204ENST00000594806 TLL1O43897 1013 aa28.52■■■□□ 2.16
TRIM28-204ENST00000594806 NAMPTP43490 491 aa28.52■■■□□ 2.16
TRIM28-204ENST00000594806 ME1P48163 572 aa28.52■■■□□ 2.16
TRIM28-204ENST00000594806 SARSP49591 514 aaKnown RBP28.52■■■□□ 2.16
TRIM28-204ENST00000594806 LARP4BQ92615 738 aaKnown RBP28.52■■■□□ 2.16
TRIM28-204ENST00000594806 RUSC1Q9BVN2 902 aa28.52■■■□□ 2.16
TRIM28-204ENST00000594806 NCLP19338 710 aaKnown RBP28.51■■■□□ 2.15
TRIM28-204ENST00000594806 AXLP30530 894 aa28.51■■■□□ 2.15
TRIM28-204ENST00000594806 RABGGTBP53611 331 aa28.51■■■□□ 2.15
TRIM28-204ENST00000594806 NCBP1Q09161 790 aaKnown RBP28.51■■■□□ 2.15
TRIM28-204ENST00000594806 AXDND1Q5T1B0 1012 aaPredicted RBP28.51■■■□□ 2.15
TRIM28-204ENST00000594806 NPAS4Q8IUM7 802 aa28.51■■■□□ 2.15
TRIM28-204ENST00000594806 ZBTB8OSQ8IWT0 167 aa28.51■■■□□ 2.15
TRIM28-204ENST00000594806 TRAIPQ9BWF2 469 aa28.51■■■□□ 2.15
TRIM28-204ENST00000594806 PCDHA7Q9UN72 937 aa28.51■■■□□ 2.15
TRIM28-204ENST00000594806 MYH11P35749 1972 aa28.51■■■□□ 2.15
TRIM28-204ENST00000594806 LAMA3Q16787 3333 aa28.5■■■□□ 2.15
TRIM28-204ENST00000594806 LRRIQ4A6NIV6 560 aa28.5■■■□□ 2.15
TRIM28-204ENST00000594806 C9IYK1 514 aa28.5■■■□□ 2.15
TRIM28-204ENST00000594806 MGEA5O60502 916 aa28.5■■■□□ 2.15
TRIM28-204ENST00000594806 CSDE1O75534 798 aaKnown RBP28.5■■■□□ 2.15
TRIM28-204ENST00000594806 PBX2P40425 430 aa28.5■■■□□ 2.15
TRIM28-204ENST00000594806 FAM189BP81408 668 aa28.5■■■□□ 2.15
TRIM28-204ENST00000594806 HTRA4P83105 476 aaPredicted RBP28.5■■■□□ 2.15
TRIM28-204ENST00000594806 ZNF697Q5TEC3 545 aa28.5■■■□□ 2.15
TRIM28-204ENST00000594806 CDCA2Q69YH5 1023 aaPredicted RBP28.5■■■□□ 2.15
TRIM28-204ENST00000594806 SPATA32Q96LK8 384 aa28.5■■■□□ 2.15
TRIM28-204ENST00000594806 ELAC1Q9H777 363 aaKnown RBP28.5■■■□□ 2.15
TRIM28-204ENST00000594806 MINDY3Q9H8M7 445 aa28.5■■■□□ 2.15
TRIM28-204ENST00000594806 INO80B-WBP1J3KQ70 363 aa28.49■■■□□ 2.15
TRIM28-204ENST00000594806 HIP1RO75146 1068 aa28.49■■■□□ 2.15
TRIM28-204ENST00000594806 ERLIN2O94905 339 aa28.49■■■□□ 2.15
TRIM28-204ENST00000594806 FGFR4P22455 802 aa28.49■■■□□ 2.15
TRIM28-204ENST00000594806 CRIPAKQ8N1N5 446 aa28.49■■■□□ 2.15
TRIM28-204ENST00000594806 LEO1Q8WVC0 666 aaPredicted RBP28.49■■■□□ 2.15
TRIM28-204ENST00000594806 SLC28A3Q9HAS3 691 aa28.49■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms