RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 CASP14P31944 242 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 MTIF2P46199 727 aaKnown RBP10.36□□□□□ -0.75
VPS25-205ENST00000590339 RARRES1P49788 294 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 TERF1P54274 439 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 ADKP55263 362 aaKnown RBP10.36□□□□□ -0.75
VPS25-205ENST00000590339 UBXN1Q04323 297 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 GNPTABQ3T906 1256 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 FIGNQ5HY92 759 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 CXCL17Q6UXB2 119 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 TLK2Q86UE8 772 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 SMAP1Q8IYB5 467 aaPredicted RBP10.36□□□□□ -0.75
VPS25-205ENST00000590339 TDHQ8IZJ6 230 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 PCSK9Q8NBP7 692 aaKnown RBP10.36□□□□□ -0.75
VPS25-205ENST00000590339 TRIM43Q96BQ3 446 aaPredicted RBP10.36□□□□□ -0.75
VPS25-205ENST00000590339 IQCDQ96DY2 449 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 PPP1R13BQ96KQ4 1090 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 BAG1Q99933 345 aaPredicted RBP10.36□□□□□ -0.75
VPS25-205ENST00000590339 TIPINQ9BVW5 301 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 STRA6Q9BX79 667 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 NAA15Q9BXJ9 866 aaKnown RBP10.36□□□□□ -0.75
VPS25-205ENST00000590339 BCAS3Q9H6U6 928 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 PARVGQ9HBI0 331 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 ANKEF1Q9NU02 776 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 TMEM39AQ9NV64 488 aa10.36□□□□□ -0.75
VPS25-205ENST00000590339 TYW1Q9NV66 732 aaKnown RBP10.36□□□□□ -0.75
VPS25-205ENST00000590339 IGSF9BQ9UPX0 1349 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 A0A1W2PPC1 479 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 A0A1W2PQJ5 194 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 DCDC2CA8MYV0 355 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 CCP110O43303 1012 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 STBD1O95210 358 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 GNA14O95837 355 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 CLTBP09497 229 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 MAPTP10636 758 aaKnown RBP10.35□□□□□ -0.75
VPS25-205ENST00000590339 PRKCSHP14314 528 aaPredicted RBP10.35□□□□□ -0.75
VPS25-205ENST00000590339 PSMC5P62195 406 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 SNX17Q15036 470 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 KNOP1Q1ED39 458 aaKnown RBP10.35□□□□□ -0.75
VPS25-205ENST00000590339 VWA3BQ502W6 1294 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 C1orf53Q5VUE5 145 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 PADI6Q6TGC4 694 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 TRIM59Q8IWR1 403 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 NELFCDQ8IXH7 590 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 RETREG2Q8NC44 543 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 DNAJC7Q99615 494 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 NOC4LQ9BVI4 516 aaKnown RBP10.35□□□□□ -0.75
VPS25-205ENST00000590339 UPF3AQ9H1J1 476 aaKnown RBP10.35□□□□□ -0.75
VPS25-205ENST00000590339 VTA1Q9NP79 307 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 PDLIM7Q9NR12 457 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 ABHD10Q9NUJ1 306 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 TCEAL9Q9UHQ7 104 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 GNEQ9Y223 722 aaKnown RBP10.35□□□□□ -0.75
VPS25-205ENST00000590339 SIK3Q9Y2K2 1263 aa10.35□□□□□ -0.75
VPS25-205ENST00000590339 ZNFX1Q9P2E3 1918 aaKnown RBP10.35□□□□□ -0.75
VPS25-205ENST00000590339 MYH9P35579 1960 aaKnown RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 RNF225M0QZC1 329 aaPredicted RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 SLC16A3O15427 465 aaKnown RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 HIP1RO75146 1068 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 EIF3JO75822 258 aaKnown RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 PRPF6O94906 941 aaKnown RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 TPM1P09493 284 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 RAG1P15918 1043 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 ITGB8P26012 769 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 CST5P28325 142 aaPredicted RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 YWHABP31946 246 aaKnown RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 FAAP100Q0VG06 881 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 ALCAMQ13740 583 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 SYCP1Q15431 976 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 STXBP2Q15833 593 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 FSCN1Q16658 493 aaKnown RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 REXO1L1PQ8IX06 675 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 MORC4Q8TE76 937 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 COPS5Q92905 334 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 MPHOSPH6Q99547 160 aaKnown RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 NUP58Q9BVL2 599 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 NDST4Q9H3R1 872 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 ST6GALNAC4Q9H4F1 302 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 ZHX3Q9H4I2 956 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 MRPL44Q9H9J2 332 aaKnown RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 JPH1Q9HDC5 661 aaPredicted RBP10.34□□□□□ -0.75
VPS25-205ENST00000590339 CAPN11Q9UMQ6 739 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 PCDHA10Q9Y5I2 948 aa10.34□□□□□ -0.75
VPS25-205ENST00000590339 LOC102724159A0A0B4J2E5 919 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 TTC26A0AVF1 554 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 KIF2AO00139 706 aaPredicted RBP10.33□□□□□ -0.76
VPS25-205ENST00000590339 ARVCFO00192 962 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 BACH1O14867 736 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 CETN3O15182 167 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 TGFB1I1O43294 461 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 CALUO43852 315 aaPredicted RBP10.33□□□□□ -0.76
VPS25-205ENST00000590339 ZNF862O60290 1169 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 ZEB2O60315 1214 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 DKC1O60832 514 aaKnown RBP eCLIP10.33□□□□□ -0.76
VPS25-205ENST00000590339 ATG7O95352 703 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 GCNT3O95395 438 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 MYL3P08590 195 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 TXNP10599 105 aaKnown RBP10.33□□□□□ -0.76
VPS25-205ENST00000590339 NMT1P30419 496 aaKnown RBP10.33□□□□□ -0.76
VPS25-205ENST00000590339 CHMP4BP1P59074 171 aa10.33□□□□□ -0.76
VPS25-205ENST00000590339 TBC1D8BQ0IIM8 1120 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms