RNA–Protein interactions for RNA: ENST00000577539.1

VAPA-203, Transcript of VAMP associated protein A, humanhuman

Gene VAPA, Length 3,760 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-203ENST00000577539 LSM14BQ9BX40 385 aaKnown RBP5.88□□□□□ -1.47
VAPA-203ENST00000577539 DBNDD1Q9H9R9 158 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 PRR12Q9ULL5 1215 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 PCDHA1Q9Y5I3 950 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 MYH8P13535 1937 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 IRS2Q9Y4H2 1338 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 ROBO3Q96MS0 1386 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 PVALEFA0A1B0GWK0 134 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 MEIS1O00470 390 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 NCK2O43639 380 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 TUBBP07437 444 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 NFIAQ12857 509 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 COASYQ13057 564 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 ZSCAN26Q16670 478 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 PRR16Q569H4 304 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 FBXL19Q6PCT2 694 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 MTMR9Q96QG7 549 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 ERGIC2Q96RQ1 377 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 SPOCK3Q9BQ16 436 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 OSBPL2Q9H1P3 480 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 ARHGAP20Q9P2F6 1191 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 RAB21Q9UL25 225 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.88□□□□□ -1.47
VAPA-203ENST00000577539 CAPN6Q9Y6Q1 641 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 SNED1Q8TER0 1413 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 ESYT2A0FGR8 921 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 RASSF10A6NK89 507 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 LRRIQ3A6PVS8 624 aaPredicted RBP5.88□□□□□ -1.47
VAPA-203ENST00000577539 MCM3P25205 808 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 ETFBP38117 255 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 SLC7A5Q01650 507 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 GFPT1Q06210 699 aaPredicted RBP5.88□□□□□ -1.47
VAPA-203ENST00000577539 MEA1Q16626 185 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 MEIOBQ8N635 442 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 TRIM58Q8NG06 486 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 HNRNPLLQ8WVV9 542 aaKnown RBP5.88□□□□□ -1.47
VAPA-203ENST00000577539 TEKT1Q969V4 418 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 RNPC3Q96LT9 517 aaKnown RBP5.88□□□□□ -1.47
VAPA-203ENST00000577539 TSGA10Q9BZW7 698 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 EHD2Q9NZN4 543 aa5.88□□□□□ -1.47
VAPA-203ENST00000577539 PHLPP1O60346 1717 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 PDE2AO00408 941 aaPredicted RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 MAP2K7O14733 419 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 ZNF263O14978 683 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 TRIM37O94972 964 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 GDF11O95390 407 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 PLA2G4BP0C869 781 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 FKBP3Q00688 224 aaKnown RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 APBA1Q02410 837 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 CYP4A11Q02928 519 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 LRRC63Q05C16 580 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 PABPC4Q13310 644 aaKnown RBP eCLIP5.87□□□□□ -1.47
VAPA-203ENST00000577539 QRICH1Q2TAL8 776 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 GPATCH4Q5T3I0 446 aaKnown RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 SPRYD7Q5W111 196 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 SLFN13Q68D06 897 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 NFRKBQ6P4R8 1299 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 POTEGQ6S5H5 508 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 RIN2Q8WYP3 895 aaPredicted RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 BCO2Q9BYV7 579 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 RIC8AQ9NPQ8 531 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 COL4A3BPQ9Y5P4 624 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 hCG_1984214I3L0E3 225 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 ZBTB5O15062 677 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 USP17L7P0C7H9 530 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 SMPD1P17405 629 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 TAL1P17542 331 aaPredicted RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 SMARCA1P28370 1054 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 DDR1Q08345 913 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 SHROOM1Q2M3G4 852 aaPredicted RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 SLC9C1Q4G0N8 1177 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 DCAF17Q5H9S7 520 aaPredicted RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 SFMBT2Q5VUG0 894 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 PAPD7Q5XG87 772 aaKnown RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 CDC42EP5Q6NZY7 148 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 HS2ST1Q7LGA3 356 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 BTLAQ7Z6A9 289 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 C11orf96Q7Z7L8 435 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 CERS5Q8N5B7 392 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 ZNF713Q8N859 430 aaPredicted RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 COG1Q8WTW3 980 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 SPAG5Q96R06 1193 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 ZIC5Q96T25 663 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 RUFY1Q96T51 708 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 TCF12Q99081 682 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 TTYH3Q9C0H2 523 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 COA1Q9GZY4 146 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 ZNF395Q9H8N7 513 aaPredicted RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 LUC7LQ9NQ29 371 aaKnown RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 FAM8A1Q9UBU6 413 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 PLAGL2Q9UPG8 496 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 PPP1R11O60927 126 aaPredicted RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 SELPP16109 830 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 HSD3B2P26439 372 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 GPC1P35052 558 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 NOP2P46087 812 aaKnown RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 ADAM9Q13443 819 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 PDIA5Q14554 519 aa5.87□□□□□ -1.47
VAPA-203ENST00000577539 EZH2Q15910 746 aaKnown RBP5.87□□□□□ -1.47
VAPA-203ENST00000577539 DNAJC21Q5F1R6 531 aaKnown RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms