RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ATP2B1P20020 1258 aa19.87■□□□□ 0.77
HDDC3-205ENST00000559898 ODR4Q5SWX8 454 aa19.87■□□□□ 0.77
HDDC3-205ENST00000559898 FAM178BQ8IXR5 827 aa19.87■□□□□ 0.77
HDDC3-205ENST00000559898 HELQQ8TDG4 1101 aa19.87■□□□□ 0.77
HDDC3-205ENST00000559898 CEP170P1Q96L14 293 aa19.87■□□□□ 0.77
HDDC3-205ENST00000559898 ELAC1Q9H777 363 aaKnown RBP19.87■□□□□ 0.77
HDDC3-205ENST00000559898 IFT122Q9HBG6 1241 aa19.87■□□□□ 0.77
HDDC3-205ENST00000559898 PER2O15055 1255 aa19.86■□□□□ 0.77
HDDC3-205ENST00000559898 FGF18O76093 207 aa19.86■□□□□ 0.77
HDDC3-205ENST00000559898 SLITRK3O94933 977 aa19.86■□□□□ 0.77
HDDC3-205ENST00000559898 GLP2RO95838 553 aa19.86■□□□□ 0.77
HDDC3-205ENST00000559898 ZSCAN20P17040 1043 aaPredicted RBP19.86■□□□□ 0.77
HDDC3-205ENST00000559898 GCOM2Q9BZD3 368 aaPredicted RBP19.86■□□□□ 0.77
HDDC3-205ENST00000559898 DHX33Q9H6R0 707 aaKnown RBP19.86■□□□□ 0.77
HDDC3-205ENST00000559898 XPNPEP1Q9NQW7 623 aa19.86■□□□□ 0.77
HDDC3-205ENST00000559898 MARCH6O60337 910 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 YWHABP31946 246 aaKnown RBP19.85■□□□□ 0.77
HDDC3-205ENST00000559898 TXKP42681 527 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 NRIP1P48552 1158 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 ADAM15Q13444 863 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 TPH2Q8IWU9 490 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 C4orf19Q8IY42 314 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 VN1R2Q8NFZ6 395 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 PRPF31Q8WWY3 499 aaKnown RBP19.85■□□□□ 0.77
HDDC3-205ENST00000559898 MTMR9Q96QG7 549 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 EIF2AK1Q9BQI3 630 aaKnown RBP19.85■□□□□ 0.77
HDDC3-205ENST00000559898 TMEM117Q9H0C3 514 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 CLEC1BQ9P126 229 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 LIMCH1Q9UPQ0 1083 aa19.85■□□□□ 0.77
HDDC3-205ENST00000559898 A0A0U1RQF3 1178 aa19.84■□□□□ 0.77
HDDC3-205ENST00000559898 POTEMA6NI47 508 aa19.84■□□□□ 0.77
HDDC3-205ENST00000559898 B4GALT3O60512 393 aa19.84■□□□□ 0.77
HDDC3-205ENST00000559898 SRGAP2CP0DJJ0 459 aa19.84■□□□□ 0.77
HDDC3-205ENST00000559898 CALCRLQ16602 461 aa19.84■□□□□ 0.77
HDDC3-205ENST00000559898 NAALADL2Q58DX5 795 aa19.84■□□□□ 0.77
HDDC3-205ENST00000559898 THNSL1Q8IYQ7 743 aa19.84■□□□□ 0.77
HDDC3-205ENST00000559898 TTC12Q9H892 705 aaPredicted RBP19.84■□□□□ 0.77
HDDC3-205ENST00000559898 BRMS1Q9HCU9 246 aa19.84■□□□□ 0.77
HDDC3-205ENST00000559898 COL4A3BPQ9Y5P4 624 aa19.84■□□□□ 0.77
HDDC3-205ENST00000559898 NT5C1B-RDH14C9J2C7 533 aa19.83■□□□□ 0.77
HDDC3-205ENST00000559898 PHKA2P46019 1235 aa19.83■□□□□ 0.77
HDDC3-205ENST00000559898 DNM2P50570 870 aa19.83■□□□□ 0.77
HDDC3-205ENST00000559898 AFF1P51825 1210 aaKnown RBP19.83■□□□□ 0.77
HDDC3-205ENST00000559898 POLGP54098 1239 aaPredicted RBP19.83■□□□□ 0.77
HDDC3-205ENST00000559898 NBR1Q14596 966 aa19.83■□□□□ 0.77
HDDC3-205ENST00000559898 EMC2Q15006 297 aa19.83■□□□□ 0.77
HDDC3-205ENST00000559898 XKR9Q5GH70 373 aa19.83■□□□□ 0.77
HDDC3-205ENST00000559898 SLFN12Q8IYM2 578 aa19.83■□□□□ 0.77
HDDC3-205ENST00000559898 HSD17B14Q9BPX1 270 aa19.83■□□□□ 0.77
HDDC3-205ENST00000559898 C11orf16Q9NQ32 467 aa19.83■□□□□ 0.77
HDDC3-205ENST00000559898 BARX2Q9UMQ3 279 aaPredicted RBP19.83■□□□□ 0.77
HDDC3-205ENST00000559898 PIN4Q9Y237 131 aaKnown RBP19.83■□□□□ 0.77
HDDC3-205ENST00000559898 PCDHB12Q9Y5F1 795 aa19.83■□□□□ 0.77
HDDC3-205ENST00000559898 FAM86C2PA6NEL3 165 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 FSCN2O14926 492 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 MBTPS2O43462 519 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 NEMFO60524 1076 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 BAG4O95429 457 aaKnown RBP19.82■□□□□ 0.76
HDDC3-205ENST00000559898 MCM7P33993 719 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 LAMTOR4Q0VGL1 99 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 PLPP4Q5VZY2 271 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 KCNT2Q6UVM3 1135 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 CATSPER4Q7RTX7 472 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 ZNF410Q86VK4 478 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 TMEM173Q86WV6 379 aaPredicted RBP19.82■□□□□ 0.76
HDDC3-205ENST00000559898 ASAP3Q8TDY4 903 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 PIGOQ8TEQ8 1089 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 MSLNLQ96KJ4 702 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 NAP1L4Q99733 375 aaKnown RBP19.82■□□□□ 0.76
HDDC3-205ENST00000559898 ZSWIM4Q9H7M6 989 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 PCDHA12Q9UN75 941 aa19.82■□□□□ 0.76
HDDC3-205ENST00000559898 HIDE1A8MVS5 230 aa19.81■□□□□ 0.76
HDDC3-205ENST00000559898 TRIM29Q14134 588 aa19.81■□□□□ 0.76
HDDC3-205ENST00000559898 ZNF174Q15697 407 aa19.81■□□□□ 0.76
HDDC3-205ENST00000559898 UBXN11Q5T124 520 aa19.81■□□□□ 0.76
HDDC3-205ENST00000559898 TWF2Q6IBS0 349 aaKnown RBP19.81■□□□□ 0.76
HDDC3-205ENST00000559898 GJD3Q8N144 294 aa19.81■□□□□ 0.76
HDDC3-205ENST00000559898 MICAL1Q8TDZ2 1067 aa19.81■□□□□ 0.76
HDDC3-205ENST00000559898 BCL7CQ8WUZ0 217 aaPredicted RBP19.81■□□□□ 0.76
HDDC3-205ENST00000559898 C8orf76Q96K31 380 aa19.81■□□□□ 0.76
HDDC3-205ENST00000559898 TLR9Q9NR96 1032 aa19.81■□□□□ 0.76
HDDC3-205ENST00000559898 MED24O75448 989 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 CD2BP2O95400 341 aaKnown RBP19.8■□□□□ 0.76
HDDC3-205ENST00000559898 SPATA31C1P0DKV0 1188 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 LAG3P18627 525 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 COL9A1P20849 921 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 SFPQP23246 707 aaKnown RBP eCLIP19.8■□□□□ 0.76
HDDC3-205ENST00000559898 HOXA11P31270 313 aaPredicted RBP19.8■□□□□ 0.76
HDDC3-205ENST00000559898 FERMT3Q86UX7 667 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 ZNF710Q8N1W2 664 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 LRRC43Q8N309 656 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 EFHBQ8N7U6 833 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 SLC7A3Q8WY07 619 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 AAASQ9NRG9 546 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 AGPAT5Q9NUQ2 364 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 FAM105AQ9NUU6 356 aa19.8■□□□□ 0.76
HDDC3-205ENST00000559898 EOMESO95936 686 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 RFC5P40937 340 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 NDUFV1P49821 464 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 ZP2Q05996 745 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms