RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SLC35G2Q8TBE7 412 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 PAGR1Q9BTK6 254 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 TMEM206Q9H813 350 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 LOXHD1Q8IVV2 1947 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 ANKRD62A6NC57 917 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 DDX3YO15523 660 aaKnown RBP14.64□□□□□ -0.07
SHMT2-222ENST00000555774 BUB1BO60566 1050 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-222ENST00000555774 MYZAPP0CAP1 466 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 BCRP11274 1271 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 KRT13P13646 458 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 TNFAIP3P21580 790 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 CYP2J2P51589 502 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 CETN1Q12798 172 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 PDCLQ13371 301 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 COG2Q14746 738 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 TRADDQ15628 312 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 CEP85LQ5SZL2 805 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 CCDC174Q6PII3 467 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 INTS8Q75QN2 995 aaKnown RBP14.64□□□□□ -0.07
SHMT2-222ENST00000555774 NIPA1Q7RTP0 329 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 RHOT2Q8IXI1 618 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 FAM151AQ8WW52 585 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 RNPC3Q96LT9 517 aaKnown RBP14.64□□□□□ -0.07
SHMT2-222ENST00000555774 LXNQ9BS40 222 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 DDX47Q9H0S4 455 aaKnown RBP14.64□□□□□ -0.07
SHMT2-222ENST00000555774 VCPKMTQ9H867 229 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 POLD4Q9HCU8 107 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 ZBTB21Q9ULJ3 1066 aa14.64□□□□□ -0.07
SHMT2-222ENST00000555774 UTP11Q9Y3A2 253 aaKnown RBP14.64□□□□□ -0.07
SHMT2-222ENST00000555774 PFASO15067 1338 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 H0YGN5 161 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 EXOC3O60645 756 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 SNRPFP62306 86 aaKnown RBP14.63□□□□□ -0.07
SHMT2-222ENST00000555774 ITGB3BPQ13352 177 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-222ENST00000555774 AOC3Q16853 763 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 KIAA1755Q5JYT7 1200 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 AGBL2Q5U5Z8 902 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 SYCP3Q8IZU3 236 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 ACER1Q8TDN7 264 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 MXRA8Q9BRK3 442 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 RAB17Q9H0T7 212 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 EPN3Q9H201 632 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 FEM1BQ9UK73 627 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 NFS1Q9Y697 457 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 NDUFAB1O14561 156 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 MAPK13O15264 365 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 HIP1RO75146 1068 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 LSP1P33241 339 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 MDH1P40925 334 aaKnown RBP14.63□□□□□ -0.07
SHMT2-222ENST00000555774 POU5F1Q01860 360 aaKnown RBP14.63□□□□□ -0.07
SHMT2-222ENST00000555774 MAPK7Q13164 816 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 PLS1Q14651 629 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 DNAAF5Q86Y56 855 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 ZFP91Q96JP5 570 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-222ENST00000555774 WRAP73Q9P2S5 460 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-222ENST00000555774 FAM169AQ9Y6X4 670 aa14.63□□□□□ -0.07
SHMT2-222ENST00000555774 GOLGA6L10A0A0M3HER8 536 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 IPO5O00410 1097 aaKnown RBP14.62□□□□□ -0.07
SHMT2-222ENST00000555774 TRIM49P0CI25 452 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 TRIM49CP0CI26 452 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 ARP10275 920 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 HSPA6P17066 643 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 PTENP60484 403 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 TNIP1Q15025 636 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 UAP1Q16222 522 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-222ENST00000555774 C11orf63Q6NUN7 778 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 TADA2BQ86TJ2 420 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 AGPAT1Q99943 283 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 IKZF4Q9H2S9 585 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 OSGEPQ9NPF4 335 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.62□□□□□ -0.07
SHMT2-222ENST00000555774 LARSQ9P2J5 1176 aaKnown RBP14.62□□□□□ -0.07
SHMT2-222ENST00000555774 DBR1Q9UK59 544 aaKnown RBP14.62□□□□□ -0.07
SHMT2-222ENST00000555774 BRWD3Q6RI45 1802 aa14.62□□□□□ -0.07
SHMT2-222ENST00000555774 FAM187AA6NFU0 413 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 SPDYE2BA6NHP3 402 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 MIF4GDA9UHW6 222 aaKnown RBP14.61□□□□□ -0.07
SHMT2-222ENST00000555774 ZBTB39O15060 712 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 PMM2O15305 246 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 TBC1D12O60347 775 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 SPDYE6P0CI01 402 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 ITGA4P13612 1032 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 CTNNA1P35221 906 aaKnown RBP14.61□□□□□ -0.07
SHMT2-222ENST00000555774 ATP1A2P50993 1020 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 HSD17B4P51659 736 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 TTC31Q49AM3 519 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-222ENST00000555774 PADI6Q6TGC4 694 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 MICALCLQ6ZW33 695 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 C3orf20Q8ND61 904 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 LMO3Q8TAP4 145 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 C7orf43Q8WVR3 580 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 ACCSQ96QU6 501 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 TIPINQ9BVW5 301 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 AMACRQ9UHK6 382 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 GGA2Q9UJY4 613 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 USP20Q9Y2K6 914 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 RPTORQ8N122 1335 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 K7ENM7 598 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 FGGP02679 453 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 P4HBP07237 508 aaKnown RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms