RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 HSP90B2PQ58FF3 399 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 C8orf74Q6P047 294 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 RNF207Q6ZRF8 634 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 TRMT1LQ7Z2T5 733 aaKnown RBP20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 SAMD3Q8N6K7 520 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 U2AF1L4Q8WU68 220 aaKnown RBP20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 MED4Q9NPJ6 270 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 APEX2Q9UBZ4 518 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 RIPK3Q9Y572 518 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 VWA5AO00534 786 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 BACH1O14867 736 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 ZBED4O75132 1171 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 PHACTR2O75167 634 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 CCNE2O96020 404 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 H2AFZP0C0S5 128 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 NSMFQ6X4W1 530 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 H2AFVQ71UI9 128 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 TPCN2Q8NHX9 752 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 LMO3Q8TAP4 145 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 EXOC4Q96A65 974 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 ATG4CQ96DT6 458 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 CBWD1Q9BRT8 395 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 TMEM206Q9H813 350 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 GPRC5CQ9NQ84 441 aa20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 CTDP1Q9Y5B0 961 aaPredicted RBP20.17■□□□□ 0.82
PRPF40B-208ENST00000548436 RNASE9P60153 205 aaKnown RBP20.16■□□□□ 0.82
PRPF40B-208ENST00000548436 RPS6KA1Q15418 735 aa20.16■□□□□ 0.82
PRPF40B-208ENST00000548436 PHLDB3Q6NSJ2 640 aa20.16■□□□□ 0.82
PRPF40B-208ENST00000548436 C4orf19Q8IY42 314 aa20.16■□□□□ 0.82
PRPF40B-208ENST00000548436 ZSWIM2Q8NEG5 633 aa20.16■□□□□ 0.82
PRPF40B-208ENST00000548436 ACCSQ96QU6 501 aa20.16■□□□□ 0.82
PRPF40B-208ENST00000548436 SYT11Q9BT88 431 aa20.16■□□□□ 0.82
PRPF40B-208ENST00000548436 DOCK5Q9H7D0 1870 aa20.16■□□□□ 0.82
PRPF40B-208ENST00000548436 KIF4AO95239 1232 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 ALCAMQ13740 583 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 IFI16Q16666 785 aaKnown RBP20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 PTPROQ16827 1216 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 GLE1Q53GS7 698 aaKnown RBP20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 GLYCTKQ8IVS8 523 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 INTUQ9ULD6 942 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 BCS1LQ9Y276 419 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 A0A0U1RQG5 324 aaPredicted RBP20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 TESPA1A2RU30 521 aaPredicted RBP20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 KCNK3O14649 394 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 GALCP54803 685 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 GTF2BQ00403 316 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 ARHGEF16Q5VV41 709 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 PLA2G4FQ68DD2 849 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 HAUS6Q7Z4H7 955 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 TMEM174Q8WUU8 243 aa20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 CNOT7Q9UIV1 285 aaKnown RBP20.15■□□□□ 0.82
PRPF40B-208ENST00000548436 EMSYQ7Z589 1322 aa20.14■□□□□ 0.82
PRPF40B-208ENST00000548436 A0A0A6YYK5 440 aaPredicted RBP20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 AGPSO00116 658 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 LRRN2O75325 713 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 GLI1P08151 1106 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 ZBTB48P10074 688 aaPredicted RBP20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 KRT13P13646 458 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 NPEPPSP55786 919 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 BACE1P56817 501 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 PSMC5P62195 406 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 PPP3CAQ08209 521 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 BAATQ14032 418 aaPredicted RBP20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 ARHGAP44Q17R89 818 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 SND1Q7KZF4 910 aaKnown RBP eCLIP20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 C12orf56Q8IXR9 622 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 TAF4BQ92750 862 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 ZKSCAN4Q969J2 545 aaPredicted RBP20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 PSD3Q9NYI0 1048 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 FZD1Q9UP38 647 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 GJA3Q9Y6H8 435 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 PHIPQ8WWQ0 1821 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 UTRNP46939 3433 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 CES2O00748 559 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 SLC16A4O15374 487 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 TNFRSF8P28908 595 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 VAMP7P51809 220 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 PEX3P56589 373 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 R3HDM1Q15032 1099 aaKnown RBP20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 C1orf220Q5T0J3 134 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 INTS8Q75QN2 995 aaKnown RBP20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 SLFN11Q7Z7L1 901 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 USP38Q8NB14 1042 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 RIN2Q8WYP3 895 aaPredicted RBP20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 CCDC43Q96MW1 224 aaKnown RBP20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 ST6GALNAC4Q9H4F1 302 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 RNF146Q9NTX7 359 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 HSPBP1Q9NZL4 362 aa20.14■□□□□ 0.81
PRPF40B-208ENST00000548436 WDR64B1ANS9 1081 aa20.13■□□□□ 0.81
PRPF40B-208ENST00000548436 LMNB1P20700 586 aa20.13■□□□□ 0.81
PRPF40B-208ENST00000548436 GGCXP38435 758 aa20.13■□□□□ 0.81
PRPF40B-208ENST00000548436 JAK3P52333 1124 aa20.13■□□□□ 0.81
PRPF40B-208ENST00000548436 PLEKHO2Q8TD55 490 aa20.13■□□□□ 0.81
PRPF40B-208ENST00000548436 KRT12Q99456 494 aa20.13■□□□□ 0.81
PRPF40B-208ENST00000548436 TMEM59LQ9UK28 342 aa20.13■□□□□ 0.81
PRPF40B-208ENST00000548436 ARID2Q68CP9 1835 aa20.12■□□□□ 0.81
PRPF40B-208ENST00000548436 ZSCAN5CA6NGD5 496 aaPredicted RBP20.12■□□□□ 0.81
PRPF40B-208ENST00000548436 TMCO5BA8MYB1 307 aa20.12■□□□□ 0.81
PRPF40B-208ENST00000548436 FOXN3O00409 490 aaPredicted RBP20.12■□□□□ 0.81
PRPF40B-208ENST00000548436 RNF40O75150 1001 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms