RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 SH2D3AQ9BRG2 576 aa10.47□□□□□ -0.73
YBX3-218ENST00000546298 LLPHQ9BRT6 129 aaKnown RBP10.47□□□□□ -0.73
YBX3-218ENST00000546298 LXNQ9BS40 222 aa10.47□□□□□ -0.73
YBX3-218ENST00000546298 CWH43Q9H720 699 aa10.47□□□□□ -0.73
YBX3-218ENST00000546298 TLE6Q9H808 572 aa10.47□□□□□ -0.73
YBX3-218ENST00000546298 TLR9Q9NR96 1032 aa10.47□□□□□ -0.73
YBX3-218ENST00000546298 CD207Q9UJ71 328 aa10.47□□□□□ -0.73
YBX3-218ENST00000546298 PCDHA12Q9UN75 941 aa10.47□□□□□ -0.73
YBX3-218ENST00000546298 COL4A3BPQ9Y5P4 624 aa10.47□□□□□ -0.73
YBX3-218ENST00000546298 COL6A3P12111 3177 aa10.47□□□□□ -0.73
YBX3-218ENST00000546298 JAK2O60674 1132 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 DTNBO60941 627 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 CSDE1O75534 798 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 LYPLA2O95372 231 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 LARGE1O95461 756 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 SRGAP2BP0DMP2 458 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 ALADP13716 330 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 FGFR4P22455 802 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 DNAJB1P25685 340 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 IRS1P35568 1242 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 LTBRP36941 435 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 NRIP1P48552 1158 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 NPEPPSP55786 919 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 SMAD4Q13485 552 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 EARS2Q5JPH6 523 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 TWF2Q6IBS0 349 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 KCNT2Q6UVM3 1135 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 ZNF598Q86UK7 904 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 TPH2Q8IWU9 490 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 MRPS27Q92552 414 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 PGBD4Q96DM1 585 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 DYDC2Q96IM9 177 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 CCDC43Q96MW1 224 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 POP1Q99575 1024 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 EPHX3Q9H6B9 360 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 DHX33Q9H6R0 707 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 NGRNQ9NPE2 291 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 RNF19AQ9NV58 838 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 SPG21Q9NZD8 308 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 RGL1Q9NZL6 768 aa10.46□□□□□ -0.73
YBX3-218ENST00000546298 PIN4Q9Y237 131 aaKnown RBP10.46□□□□□ -0.73
YBX3-218ENST00000546298 PTPRSQ13332 1948 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 FAM205CA6NFA0 338 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 PI4K2BG5E9Z4 385 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 NEMFO60524 1076 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 ZNF623O75123 536 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 COL9A1P20849 921 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 GTF2F1P35269 517 aaKnown RBP eCLIP10.45□□□□□ -0.74
YBX3-218ENST00000546298 PHKA2P46019 1235 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 ALDH7A1P49419 539 aaKnown RBP10.45□□□□□ -0.74
YBX3-218ENST00000546298 HMGN5P82970 282 aaKnown RBP10.45□□□□□ -0.74
YBX3-218ENST00000546298 CYP4A11Q02928 519 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 SPIRE1Q08AE8 756 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 NCBP1Q09161 790 aaKnown RBP10.45□□□□□ -0.74
YBX3-218ENST00000546298 LAMTOR4Q0VGL1 99 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 TFDP1Q14186 410 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 CTTNQ14247 550 aaKnown RBP10.45□□□□□ -0.74
YBX3-218ENST00000546298 MXD4Q14582 209 aaPredicted RBP10.45□□□□□ -0.74
YBX3-218ENST00000546298 EMC2Q15006 297 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 PCBP1Q15365 356 aaKnown RBP eCLIP10.45□□□□□ -0.74
YBX3-218ENST00000546298 SMAD2Q15796 467 aaKnown RBP10.45□□□□□ -0.74
YBX3-218ENST00000546298 TMEM31Q5JXX7 168 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 CLLU1OSQ5K130 101 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 GLB1LQ6UWU2 654 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 LRRC55Q6ZSA7 311 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 RBM23Q86U06 439 aaKnown RBP10.45□□□□□ -0.74
YBX3-218ENST00000546298 ADHFE1Q8IWW8 467 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 HELQQ8TDG4 1101 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 PRPF31Q8WWY3 499 aaKnown RBP10.45□□□□□ -0.74
YBX3-218ENST00000546298 TMEM143Q96AN5 459 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 C8orf76Q96K31 380 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 MTRQ99707 1265 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 EIF2AK1Q9BQI3 630 aaKnown RBP10.45□□□□□ -0.74
YBX3-218ENST00000546298 TTC12Q9H892 705 aaPredicted RBP10.45□□□□□ -0.74
YBX3-218ENST00000546298 ANKEF1Q9NU02 776 aa10.45□□□□□ -0.74
YBX3-218ENST00000546298 FSCN2O14926 492 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 MBTPS2O43462 519 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 DGAT1O75907 488 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 SLITRK3O94933 977 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 SEC24BO95487 1268 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 SRGAP2CP0DJJ0 459 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 XRCC6P12956 609 aaKnown RBP eCLIP10.44□□□□□ -0.74
YBX3-218ENST00000546298 TXKP42681 527 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 FOSBP53539 338 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 ERVFC1P60507 584 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 DLX2Q07687 328 aaPredicted RBP10.44□□□□□ -0.74
YBX3-218ENST00000546298 COASYQ13057 564 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 ORC2Q13416 577 aaPredicted RBP10.44□□□□□ -0.74
YBX3-218ENST00000546298 CLUL1Q15846 466 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 DUSP6Q16828 381 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 TMC7Q7Z402 723 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 ADGRD2Q7Z7M1 963 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 FERMT3Q86UX7 667 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 KSR1Q8IVT5 923 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 CCDC83Q8IWF9 413 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 RNF149Q8NC42 400 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 CNNM3Q8NE01 707 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 HSD17B14Q9BPX1 270 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 TCF25Q9BQ70 676 aa10.44□□□□□ -0.74
YBX3-218ENST00000546298 IFT122Q9HBG6 1241 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 145.4 ms