RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 GAB3Q8WWW8 586 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 C1GALT1C1Q96EU7 318 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 DDX11Q96FC9 970 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 OR10A5Q9H207 317 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 FAM204AQ9H8W3 233 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 IPPQ9Y573 584 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 A0A0A6YYJ9 748 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 H3BML4 177 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 ZBED1O96006 694 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 C8BP07358 591 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 YBX1P67809 324 aaKnown RBP9.35□□□□□ -0.91
NUP54-215ENST00000514313 LLGL1Q15334 1064 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 C3orf36Q3SXR2 165 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 CD300LDQ6UXZ3 194 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 SRGAP1Q7Z6B7 1085 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 DENND1CQ8IV53 801 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 FAM43AQ8N2R8 423 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 MARCH10Q8NA82 808 aaPredicted RBP9.35□□□□□ -0.91
NUP54-215ENST00000514313 STRBPQ96SI9 672 aaKnown RBP9.35□□□□□ -0.91
NUP54-215ENST00000514313 NOL10Q9BSC4 688 aaKnown RBP9.35□□□□□ -0.91
NUP54-215ENST00000514313 BTBD2Q9BX70 525 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 DMRT3Q9NQL9 472 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 PCMTD2Q9NV79 361 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.35□□□□□ -0.91
NUP54-215ENST00000514313 FTSJ1Q9UET6 329 aa9.35□□□□□ -0.91
NUP54-215ENST00000514313 TUSC2O75896 110 aa9.34□□□□□ -0.91
NUP54-215ENST00000514313 FBLN1P23142 703 aa9.34□□□□□ -0.91
NUP54-215ENST00000514313 GPR15P49685 360 aa9.34□□□□□ -0.91
NUP54-215ENST00000514313 IL13RA1P78552 427 aa9.34□□□□□ -0.91
NUP54-215ENST00000514313 ZC3H18Q86VM9 953 aaKnown RBP9.34□□□□□ -0.91
NUP54-215ENST00000514313 FAM156AQ8NDB6 213 aa9.34□□□□□ -0.91
NUP54-215ENST00000514313 FATE1Q969F0 183 aa9.34□□□□□ -0.91
NUP54-215ENST00000514313 ARPC5LQ9BPX5 153 aa9.34□□□□□ -0.91
NUP54-215ENST00000514313 NGRNQ9NPE2 291 aaKnown RBP9.34□□□□□ -0.91
NUP54-215ENST00000514313 DLL4Q9NR61 685 aa9.34□□□□□ -0.91
NUP54-215ENST00000514313 TAGLN3Q9UI15 199 aa9.34□□□□□ -0.91
NUP54-215ENST00000514313 SCOCQ9UIL1 159 aa9.34□□□□□ -0.91
NUP54-215ENST00000514313 UBXN7O94888 489 aa9.33□□□□□ -0.92
NUP54-215ENST00000514313 NFATC3Q12968 1075 aa9.33□□□□□ -0.92
NUP54-215ENST00000514313 C10orf62Q5T681 223 aaPredicted RBP9.33□□□□□ -0.92
NUP54-215ENST00000514313 PHF19Q5T6S3 580 aa9.33□□□□□ -0.92
NUP54-215ENST00000514313 KANK2Q63ZY3 851 aa9.33□□□□□ -0.92
NUP54-215ENST00000514313 SPICE1Q8N0Z3 855 aa9.33□□□□□ -0.92
NUP54-215ENST00000514313 OR5AN1Q8NGI8 311 aa9.33□□□□□ -0.92
NUP54-215ENST00000514313 FDXACB1Q9BRP7 624 aaPredicted RBP9.33□□□□□ -0.92
NUP54-215ENST00000514313 B3GNT5Q9BYG0 378 aa9.33□□□□□ -0.92
NUP54-215ENST00000514313 KCMF1Q9P0J7 381 aa9.33□□□□□ -0.92
NUP54-215ENST00000514313 FAM227AF5H4B4 570 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 ABLIM1O14639 778 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 B3GALT2O43825 422 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 IL18BPO95998 194 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 ALDH2P05091 517 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 MC3RP41968 323 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 SAFB2Q14151 953 aaKnown RBP eCLIP9.32□□□□□ -0.92
NUP54-215ENST00000514313 MUM1L1Q5H9M0 696 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 BTNL9Q6UXG8 535 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 CCDC149Q6ZUS6 474 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 GLB1L3Q8NCI6 653 aaPredicted RBP9.32□□□□□ -0.92
NUP54-215ENST00000514313 PARD3BQ8TEW8 1205 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 RIN2Q8WYP3 895 aaPredicted RBP9.32□□□□□ -0.92
NUP54-215ENST00000514313 HIST1H2AHQ96KK5 128 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 HIST1H2AJQ99878 128 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 SYT3Q9BQG1 590 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 TMEM60Q9H2L4 133 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 ARHGAP20Q9P2F6 1191 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 INTUQ9ULD6 942 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 PHTF1Q9UMS5 762 aa9.32□□□□□ -0.92
NUP54-215ENST00000514313 MAFGO15525 162 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 SEC24DO94855 1032 aaPredicted RBP9.31□□□□□ -0.92
NUP54-215ENST00000514313 HRGP04196 525 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 MYL3P08590 195 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 WASP42768 502 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 MCAMP43121 646 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 GLRBP48167 497 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 CACNB2Q08289 660 aaPredicted RBP9.31□□□□□ -0.92
NUP54-215ENST00000514313 STILQ15468 1287 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 CCDC178Q5BJE1 867 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 TSHZ1Q6ZSZ6 1077 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 BMP8AQ7Z5Y6 402 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 MORC1Q86VD1 984 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 IRF2BP1Q8IU81 584 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 ABI1Q8IZP0 508 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 CPA5Q8WXQ8 436 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 DPF2Q92785 391 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 IL17RAQ96F46 866 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 ELAC2Q9BQ52 826 aaKnown RBP9.31□□□□□ -0.92
NUP54-215ENST00000514313 TACO1Q9BSH4 297 aaKnown RBP9.31□□□□□ -0.92
NUP54-215ENST00000514313 ADI1Q9BV57 179 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 SYNPO2Q9UMS6 1093 aa9.31□□□□□ -0.92
NUP54-215ENST00000514313 MAFO75444 373 aaPredicted RBP9.3□□□□□ -0.92
NUP54-215ENST00000514313 SLC5A1P13866 664 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 SERPINB3P29508 390 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 VIPR1P32241 457 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 HTR3AP46098 478 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 CD83Q01151 205 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 PPP3CAQ08209 521 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 MORC3Q14149 939 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 LONRF3Q496Y0 759 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 KLHDC10Q6PID8 442 aa9.3□□□□□ -0.92
NUP54-215ENST00000514313 WDR48Q8TAF3 677 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms