RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 FUT8Q9BYC5 575 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 BCCIPQ9P287 314 aaKnown RBP eCLIP9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 RPTORQ8N122 1335 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 LRRIQ4A6NIV6 560 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 ENO4A6NNW6 628 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 SPATA31C2B4DYI2 1134 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 GJB1P08034 283 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 SRGAP2CP0DJJ0 459 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 HSPA6P17066 643 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 CASP8Q14790 479 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 IQCB1Q15051 598 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 ODR4Q5SWX8 454 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 MOXD1Q6UVY6 613 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 RNF217Q8TC41 542 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 SEPT1Q8WYJ6 367 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 TRIB2Q92519 343 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 IKZF4Q9H2S9 585 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 ABHD16BQ9H3Z7 469 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 SLC45A1Q9Y2W3 748 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 FAM169AQ9Y6X4 670 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 CASP8AP2Q9UKL3 1982 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 CTAGE15A4D2H0 777 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 DHX15O43143 795 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 GTPBP6O43824 516 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 PRPF6O94906 941 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 CTAGE8P0CG41 777 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 SMPD1P17405 629 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 PEX3P56589 373 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 PSMC5P62195 406 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 SPIRE1Q08AE8 756 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 LRRC31Q6UY01 552 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 TLK2Q86UE8 772 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 CTAGE6Q86UF2 777 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 SFR1Q86XK3 245 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 CTAGE4Q8IX94 777 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 BICD1Q96G01 975 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 APBA2Q99767 749 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 REEP2Q9BRK0 252 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 ZNFX1Q9P2E3 1918 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 FKTNO75072 461 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 FARP2O94887 1054 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 GH1P01241 217 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 NMT1P30419 496 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 HNRNPH1P31943 449 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 NAP1L1P55209 391 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 VSNL1P62760 191 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 GNGT1P63211 74 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 OLFML2BQ68BL8 750 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 CCDC65Q8IXS2 484 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 NLRP4Q96MN2 994 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 TACO1Q9BSH4 297 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 TRIM9Q9C026 710 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 YY1AP1Q9H869 796 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 G3BP2Q9UN86 482 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 ZNF862O60290 1169 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 ZRANB2O95218 330 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 HOXD10P28358 340 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 CCND3P30281 292 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 HPDP32754 393 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 JAK3P52333 1124 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 STK4Q13043 487 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 PPFIBP1Q86W92 1011 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 PCMTD1Q96MG8 357 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 PNKPQ96T60 521 aa9.48□□□□□ -0.89
LIMCH1-209ENST00000509277 DNAJC25-GNG10A0A024R161 153 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 SOWAHDA6NJG2 315 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 CLIC2O15247 247 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 CCP110O43303 1012 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 SUPT20HL2P0C7V6 817 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 TBC1D8BQ0IIM8 1120 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 STIM1Q13586 685 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 ZC2HC1CQ53FD0 456 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 FAM160B1Q5W0V3 765 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 METTL7BQ6UX53 244 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 CXCL17Q6UXB2 119 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 CDR2LQ86X02 465 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 DHX40Q8IX18 779 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 ODF2LQ9ULJ1 636 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 RLFQ13129 1914 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 K7ENM7 598 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 SLC16A4O15374 487 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 ADCY6O43306 1168 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 HIP1RO75146 1068 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 CYP11B2P19099 503 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 PPP2R5CQ13362 524 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 CELF3Q5SZQ8 465 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 OTUD6AQ7L8S5 288 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 FAM178BQ8IXR5 827 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 SOCS4Q8WXH5 440 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 PYM1Q9BRP8 204 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 SPC25Q9HBM1 224 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 STK17AQ9UEE5 414 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 AKT3Q9Y243 479 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 KIAA1217Q5T5P2 1943 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 GOLGA6CA6NDK9 693 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 SRGAP2O75044 1071 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 GOLGA6DP0CG33 693 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 CLCN3P51790 818 aa9.47□□□□□ -0.89
LIMCH1-209ENST00000509277 NLRP12P59046 1061 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms