RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 LARP4Q71RC2 724 aaKnown RBP eCLIP6.6□□□□□ -1.35
HMGB1P38-201ENST00000490557 ANKRD13AQ8IZ07 590 aa6.6□□□□□ -1.35
HMGB1P38-201ENST00000490557 LMBR1Q8WVP7 490 aa6.6□□□□□ -1.35
HMGB1P38-201ENST00000490557 SMAD5Q99717 465 aaKnown RBP6.6□□□□□ -1.35
HMGB1P38-201ENST00000490557 QRSL1Q9H0R6 528 aaKnown RBP6.6□□□□□ -1.35
HMGB1P38-201ENST00000490557 KCTD10Q9H3F6 313 aa6.6□□□□□ -1.35
HMGB1P38-201ENST00000490557 DNAJC28Q9NX36 388 aa6.6□□□□□ -1.35
HMGB1P38-201ENST00000490557 TRHDEQ9UKU6 1024 aa6.6□□□□□ -1.35
HMGB1P38-201ENST00000490557 ADAMTS20P59510 1910 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 CFBP00751 764 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 LGALS4P56470 323 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 CCDC178Q5BJE1 867 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 PGM2L1Q6PCE3 622 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 GLB1L2Q8IW92 636 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 CMIPQ8IY22 773 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 AUTS2Q8WXX7 1259 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 LPPQ93052 612 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 ADAM7Q9H2U9 754 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 C12orf65Q9H3J6 166 aaKnown RBP6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 MKS1Q9NXB0 559 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 PRSS50Q9UI38 385 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 ZBTB21Q9ULJ3 1066 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 SLC4A7Q9Y6M7 1214 aa6.59□□□□□ -1.35
HMGB1P38-201ENST00000490557 WASHC2CQ9Y4E1 1318 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 K7ESF4 209 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 LAMTOR5O43504 91 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 MYBL2P10244 700 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 RAC3P60763 192 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 ERVK-21P61565 698 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 PPP2CBP62714 309 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 PPP2CAP67775 309 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 ABCB5Q2M3G0 1257 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 TOR2AQ5JU69 321 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 ERICH6BQ5W0A0 696 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 BCL6BQ8N143 479 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 OR14K1Q8NGZ2 314 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 UIMC1Q96RL1 719 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 TRIM8Q9BZR9 551 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 CCDC8Q9H0W5 538 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 XYLT2Q9H1B5 865 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 DPP7Q9UHL4 492 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 PUF60Q9UHX1 559 aaKnown RBP6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 RBM8AQ9Y5S9 174 aaKnown RBP6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 MRFAP1Q9Y605 127 aa6.58□□□□□ -1.36
HMGB1P38-201ENST00000490557 PPM1GO15355 546 aaPredicted RBP6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 ARHGAP6O43182 974 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 MT-CO1P00395 513 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 HNRNPLP14866 589 aaKnown RBP eCLIP6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 CCND1P24385 295 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 MRPS9P82933 396 aaKnown RBP6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 CDK17Q00537 523 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 MGAT5Q09328 741 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 ZNF827Q17R98 1081 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 BRDTQ58F21 947 aaPredicted RBP6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 KRT40Q6A162 431 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 SPOCD1Q6ZMY3 1216 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 RPUSD2Q8IZ73 545 aaKnown RBP6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 SLC7A6OSQ96CW6 309 aaPredicted RBP6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 LMF1Q96S06 567 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 OSBPL6Q9BZF3 934 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 HAPLN2Q9GZV7 340 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 CCM2LQ9NUG4 571 aaPredicted RBP6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 TYW1Q9NV66 732 aaKnown RBP6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 DDX56Q9NY93 547 aaKnown RBP6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 CDY2AQ9Y6F7 541 aa6.57□□□□□ -1.36
HMGB1P38-201ENST00000490557 SHTN1A0MZ66 631 aa6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 IARSP41252 1262 aaKnown RBP6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 GPR3P46089 330 aa6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 SLC5A3P53794 718 aa6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 SRSF2Q01130 221 aaKnown RBP6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 EXOSC10Q01780 885 aaKnown RBP6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 TRIM25Q14258 630 aaKnown RBP6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 ACAP2Q15057 778 aa6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 PNMA8AQ86V59 439 aaPredicted RBP6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 KRTAP19-1Q8IUB9 90 aa6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 NKD2Q969F2 451 aaPredicted RBP6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 TEPSINQ96N21 525 aa6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 LRRC37BQ96QE4 947 aa6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 C14orf93Q9H972 538 aaKnown RBP6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 DUSP10Q9Y6W6 482 aa6.56□□□□□ -1.36
HMGB1P38-201ENST00000490557 NPEPPSL1A6NEC2 478 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 XPOTO43592 962 aaKnown RBP6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 CELA3BP08861 270 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 CCT2P78371 535 aaKnown RBP6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 TCIRG1Q13488 830 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 RNF151Q2KHN1 245 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 SLFN13Q68D06 897 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 GLB1LQ6UWU2 654 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 GAREM2Q75VX8 874 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 PLA2G15Q8NCC3 412 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 PAWRQ96IZ0 340 aaKnown RBP6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 KRTAP4-12Q9BQ66 201 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 ACE2Q9BYF1 805 aaPredicted RBP6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 IFT122Q9HBG6 1241 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 EVLQ9UI08 416 aaPredicted RBP6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 TMPRSS11EQ9UL52 423 aa6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 CTDP1Q9Y5B0 961 aaPredicted RBP6.55□□□□□ -1.36
HMGB1P38-201ENST00000490557 A0A0A6YYK5 440 aaPredicted RBP6.54□□□□□ -1.36
HMGB1P38-201ENST00000490557 CDC14BO60729 498 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms