RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 KIZQ2M2Z5 673 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 FAM102BQ5T8I3 360 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 PPP4R3CPQ6ZMV5 832 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 SPIRE2Q8WWL2 714 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 PGBD4Q96DM1 585 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 PNMA5Q96PV4 448 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 SEL1LQ9UBV2 794 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 MICAL3Q7RTP6 2002 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 TBCAO75347 108 aaKnown RBP11.85□□□□□ -0.51
UBR4-208ENST00000459947 GAP43P17677 238 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 MARCKSP29966 332 aaPredicted RBP11.85□□□□□ -0.51
UBR4-208ENST00000459947 CD52P31358 61 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 FAM187BQ17R55 369 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 C9orf50Q5SZB4 431 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 SV2BQ7L1I2 683 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 OTOP2Q7RTS6 562 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 HERC6Q8IVU3 1022 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 IQUBQ8NA54 791 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 ZBED2Q9BTP6 218 aa11.85□□□□□ -0.51
UBR4-208ENST00000459947 NOC2LQ9Y3T9 749 aaKnown RBP11.85□□□□□ -0.51
UBR4-208ENST00000459947 NCLP19338 710 aaKnown RBP11.84□□□□□ -0.51
UBR4-208ENST00000459947 STAT6P42226 847 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 ALCAMQ13740 583 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 SYMPKQ92797 1274 aaKnown RBP11.84□□□□□ -0.51
UBR4-208ENST00000459947 NLRP4Q96MN2 994 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 UBN1Q9NPG3 1134 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 RGS18Q9NS28 235 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 ST3GAL5Q9UNP4 418 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 INSL6Q9Y581 213 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 SCN5AQ14524 2016 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 CEBPZQ03701 1054 aaKnown RBP11.84□□□□□ -0.51
UBR4-208ENST00000459947 GPNMBQ14956 572 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 SLC24A5Q71RS6 500 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 FAM228AQ86W67 206 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 TMEM143Q96AN5 459 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 HVCN1Q96D96 273 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 RAD9AQ99638 391 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 GINS2Q9Y248 185 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 SIP14410 1827 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 A0A087WZ62 844 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 A0A1W2PQ27 194 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 A0A1W2PQ64 194 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 A0A1W2PQD8 194 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 N4BP3O15049 544 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 SSBP05455 408 aaKnown RBP eCLIP11.84□□□□□ -0.51
UBR4-208ENST00000459947 MAPTP10636 758 aaKnown RBP11.84□□□□□ -0.51
UBR4-208ENST00000459947 PLCG1P19174 1290 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 DDIT3P35638 169 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 MKRN4PQ13434 485 aaPredicted RBP11.84□□□□□ -0.51
UBR4-208ENST00000459947 DSC3Q14574 896 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 ZRSR1Q15695 479 aaKnown RBP11.84□□□□□ -0.51
UBR4-208ENST00000459947 CDCA2Q69YH5 1023 aaPredicted RBP11.84□□□□□ -0.51
UBR4-208ENST00000459947 STXBP4Q6ZWJ1 553 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 RNF149Q8NC42 400 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 FDXACB1Q9BRP7 624 aaPredicted RBP11.84□□□□□ -0.51
UBR4-208ENST00000459947 TMEM134Q9H6X4 195 aa11.84□□□□□ -0.51
UBR4-208ENST00000459947 FAM13AO94988 1023 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 EOMESO95936 686 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 NFX1Q12986 1120 aaKnown RBP11.83□□□□□ -0.52
UBR4-208ENST00000459947 ZNF697Q5TEC3 545 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 RINT1Q6NUQ1 792 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 TNMDQ9H2S6 317 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 CNTNAP2Q9UHC6 1331 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 E9PMD0 336 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 MYL1P05976 194 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 TMEM62Q0P6H9 643 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 ADALQ6DHV7 355 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 NOTUMQ6P988 496 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 C1orf186Q6ZWK4 172 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 GPBP1Q86WP2 473 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 CMTR2Q8IYT2 770 aaKnown RBP11.83□□□□□ -0.52
UBR4-208ENST00000459947 TMEM161AQ9NX61 479 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 TFIP11Q9UBB9 837 aaKnown RBP11.83□□□□□ -0.52
UBR4-208ENST00000459947 PP2D1A8MPX8 630 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 ENPP3O14638 875 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 GLRA2P23416 452 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 DNM1Q05193 864 aaKnown RBP11.83□□□□□ -0.52
UBR4-208ENST00000459947 MAPK6Q16659 721 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 FAM173BQ6P4H8 233 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 CCDC47Q96A33 483 aaKnown RBP11.83□□□□□ -0.52
UBR4-208ENST00000459947 MRPL9Q9BYD2 267 aaKnown RBP11.83□□□□□ -0.52
UBR4-208ENST00000459947 PCDHB7Q9Y5E2 793 aa11.83□□□□□ -0.52
UBR4-208ENST00000459947 TMEM150BA6NC51 233 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 GOLGA6L4A6NEF3 574 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 LRRIQ4A6NIV6 560 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 SLC12A3P55017 1021 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 FOXD4L5Q5VV16 416 aaPredicted RBP11.82□□□□□ -0.52
UBR4-208ENST00000459947 LEO1Q8WVC0 666 aaPredicted RBP11.82□□□□□ -0.52
UBR4-208ENST00000459947 FOXD4L4Q8WXT5 416 aaPredicted RBP11.82□□□□□ -0.52
UBR4-208ENST00000459947 TOP1MTQ969P6 601 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 GTPBP4Q9BZE4 634 aaKnown RBP11.82□□□□□ -0.52
UBR4-208ENST00000459947 AGPAT5Q9NUQ2 364 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 GJB5O95377 273 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 PLS3P13797 630 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 CMA1P23946 247 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 CAPSQ13938 189 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 KARSQ15046 597 aaKnown RBP11.82□□□□□ -0.52
UBR4-208ENST00000459947 KYAT1Q16773 422 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 ASAP3Q8TDY4 903 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 ADPGKQ9BRR6 497 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms