RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ADGRE4PQ86SQ3 457 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 THNSL2Q86YJ6 484 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 TMPRSS6Q8IU80 811 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 UBR7Q8N806 425 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 ZNF483Q8TF39 744 aaPredicted RBP5.54□□□□□ -1.52
VPS29-202ENST00000447578 JDP2Q8WYK2 163 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 DLG3Q92796 817 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 CLIP3Q96DZ5 547 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 NCOA5Q9HCD5 579 aaKnown RBP5.54□□□□□ -1.52
VPS29-202ENST00000447578 MSL2Q9HCI7 577 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 REXO2Q9Y3B8 237 aaKnown RBP5.54□□□□□ -1.52
VPS29-202ENST00000447578 SH3BP1Q9Y3L3 701 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 ASB1Q9Y576 335 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 B3GALT1Q9Y5Z6 326 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 ODR4Q5SWX8 454 aa5.53□□□□□ -1.52
VPS29-202ENST00000447578 CATSPEREQ5SY80 951 aa5.53□□□□□ -1.52
VPS29-202ENST00000447578 CNNM4Q6P4Q7 775 aa5.53□□□□□ -1.52
VPS29-202ENST00000447578 DDX42Q86XP3 938 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS29-202ENST00000447578 FMNL3Q8IVF7 1028 aa5.53□□□□□ -1.52
VPS29-202ENST00000447578 THEMISQ8N1K5 641 aaPredicted RBP5.53□□□□□ -1.52
VPS29-202ENST00000447578 GSTCDQ8NEC7 633 aa5.53□□□□□ -1.52
VPS29-202ENST00000447578 SCLYQ96I15 445 aa5.53□□□□□ -1.52
VPS29-202ENST00000447578 CLUHP3Q96NS8 147 aa5.53□□□□□ -1.52
VPS29-202ENST00000447578 SLC12A8A0AV02 714 aa5.52□□□□□ -1.53
VPS29-202ENST00000447578 KRTAP23-1A1A580 65 aa5.52□□□□□ -1.53
VPS29-202ENST00000447578 KCNQ2O43526 872 aa5.52□□□□□ -1.53
VPS29-202ENST00000447578 KCNA6P17658 529 aa5.52□□□□□ -1.53
VPS29-202ENST00000447578 MAKP20794 623 aa5.52□□□□□ -1.53
VPS29-202ENST00000447578 APEX1P27695 318 aaKnown RBP5.52□□□□□ -1.53
VPS29-202ENST00000447578 CDKN1CP49918 316 aaPredicted RBP5.52□□□□□ -1.53
VPS29-202ENST00000447578 EXOSC10Q01780 885 aaKnown RBP5.52□□□□□ -1.53
VPS29-202ENST00000447578 CRHR2Q13324 411 aa5.52□□□□□ -1.53
VPS29-202ENST00000447578 KRTAP15-1Q3LI76 137 aa5.52□□□□□ -1.53
VPS29-202ENST00000447578 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.52□□□□□ -1.53
VPS29-202ENST00000447578 ABHD17CQ6PCB6 329 aa5.52□□□□□ -1.53
VPS29-202ENST00000447578 MAGEB10Q96LZ2 347 aaPredicted RBP5.52□□□□□ -1.53
VPS29-202ENST00000447578 FAM126AQ9BYI3 521 aaPredicted RBP5.52□□□□□ -1.53
VPS29-202ENST00000447578 CELF4Q9BZC1 486 aaKnown RBP5.52□□□□□ -1.53
VPS29-202ENST00000447578 AURKAIP1Q9NWT8 199 aaPredicted RBP5.52□□□□□ -1.53
VPS29-202ENST00000447578 MCM8Q9UJA3 840 aa5.52□□□□□ -1.53
VPS29-202ENST00000447578 CTDP1Q9Y5B0 961 aaPredicted RBP5.52□□□□□ -1.53
VPS29-202ENST00000447578 A0A1W2PRX2 142 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 PMS2P1A4D2B8 440 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 ALG1L2C9J202 215 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 POU3F3P20264 500 aaPredicted RBP5.51□□□□□ -1.53
VPS29-202ENST00000447578 SDHAP31040 664 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 SCNN1GP51170 649 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 ADCY7P51828 1080 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 ATXN1P54253 815 aaKnown RBP5.51□□□□□ -1.53
VPS29-202ENST00000447578 ANTXR2P58335 489 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 SLC25A3Q00325 362 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 FAM50AQ14320 339 aaKnown RBP5.51□□□□□ -1.53
VPS29-202ENST00000447578 BRDTQ58F21 947 aaPredicted RBP5.51□□□□□ -1.53
VPS29-202ENST00000447578 Q6ZRM9 215 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 ATL2Q8NHH9 583 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 CALML6Q8TD86 181 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 RABGGTAQ92696 567 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 FOXRED1Q96CU9 486 aaPredicted RBP5.51□□□□□ -1.53
VPS29-202ENST00000447578 RPL10LQ96L21 214 aaKnown RBP5.51□□□□□ -1.53
VPS29-202ENST00000447578 MRPL4Q9BYD3 311 aaKnown RBP5.51□□□□□ -1.53
VPS29-202ENST00000447578 PARPBPQ9NWS1 579 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 TCEAL9Q9UHQ7 104 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 MAPRE3Q9UPY8 281 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 SMARCA4P51532 1647 aa5.51□□□□□ -1.53
VPS29-202ENST00000447578 TOP2AP11388 1531 aaKnown RBP5.5□□□□□ -1.53
VPS29-202ENST00000447578 C2orf78A6NCI8 922 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 GSG1L2A8MUP6 293 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 EFCAB14O75071 495 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 ZBTB48P10074 688 aaPredicted RBP5.5□□□□□ -1.53
VPS29-202ENST00000447578 KRT4P19013 534 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 SDSP20132 328 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 RGS19P49795 217 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 NANOS3P60323 173 aaKnown RBP5.5□□□□□ -1.53
VPS29-202ENST00000447578 PURAQ00577 322 aaKnown RBP5.5□□□□□ -1.53
VPS29-202ENST00000447578 IRF9Q00978 393 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 DDX46Q7L014 1031 aaKnown RBP5.5□□□□□ -1.53
VPS29-202ENST00000447578 FGD2Q7Z6J4 655 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 RNF180Q86T96 592 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 RTN4RL1Q86UN2 441 aaPredicted RBP5.5□□□□□ -1.53
VPS29-202ENST00000447578 LRRTM3Q86VH5 581 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 IGSF22Q8N9C0 903 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 GPHA2Q96T91 129 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 AGAP2Q99490 1192 aa5.5□□□□□ -1.53
VPS29-202ENST00000447578 TARS2Q9BW92 718 aaKnown RBP5.5□□□□□ -1.53
VPS29-202ENST00000447578 MAGEC2Q9UBF1 373 aaPredicted RBP5.5□□□□□ -1.53
VPS29-202ENST00000447578 RBM8AQ9Y5S9 174 aaKnown RBP5.5□□□□□ -1.53
VPS29-202ENST00000447578 TCRBV16S1A1N1A0A5B0 115 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 CYP27B1O15528 508 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 RPS6KA4O75676 772 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 CPEP16870 476 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 RGS3P49796 1198 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 ALDH6A1Q02252 535 aaKnown RBP5.49□□□□□ -1.53
VPS29-202ENST00000447578 MAP3K12Q12852 859 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 KLHDC10Q6PID8 442 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 PCSK4Q6UW60 755 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 Q6ZPA2 131 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 GAREM2Q75VX8 874 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 BRAPQ7Z569 592 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 MRGPRGQ86SM5 289 aa5.49□□□□□ -1.53
VPS29-202ENST00000447578 AHI1Q8N157 1196 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms