RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ACVR2BQ13705 512 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 HAUS6Q7Z4H7 955 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 PPTC7Q8NI37 304 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 ATP8B4Q8TF62 1192 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 NTPCRQ9BSD7 190 aaKnown RBP19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 MKNK1Q9BUB5 465 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 STRA6Q9BX79 667 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 PDLIM7Q9NR12 457 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 CCDC169A6NNP5 214 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 TNPO2O14787 897 aaKnown RBP19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 SNAI1O95863 264 aaPredicted RBP19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 CCDC175P0C221 793 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 ARHGAP1Q07960 439 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 CRHR2Q13324 411 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 HSDL1Q3SXM5 330 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 TRIM65Q6PJ69 517 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 TCP11Q8WWU5 503 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 PCYT2Q99447 389 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 NDST4Q9H3R1 872 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 DHX33Q9H6R0 707 aaKnown RBP19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 POLD4Q9HCU8 107 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 PDGFCQ9NRA1 345 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 ERAP1Q9NZ08 941 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 ARMCX3Q9UH62 379 aaPredicted RBP19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 FRMD4BQ9Y2L6 1034 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 ATP4AP20648 1035 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 HOXD13P35453 343 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 ADKP55263 362 aaKnown RBP19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 DUSP28Q4G0W2 176 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 ZC2HC1CQ53FD0 456 aaPredicted RBP19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 OLFML2BQ68BL8 750 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 TMTC1Q8IUR5 882 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 SLC9A9Q8IVB4 645 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 TMEM174Q8WUU8 243 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 TSC1Q92574 1164 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 APBA2Q99767 749 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 SH2D3AQ9BRG2 576 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 KATNBL1Q9H079 304 aa19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 POLR3FQ9H1D9 316 aaPredicted RBP19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 ZHX1Q9UKY1 873 aaPredicted RBP19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 ZNF215Q9UL58 517 aaPredicted RBP19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.94■□□□□ 0.78
CCDC88C-203ENST00000389856 HBP1O60381 514 aa19.93■□□□□ 0.78
CCDC88C-203ENST00000389856 PSMC2P35998 433 aaKnown RBP19.93■□□□□ 0.78
CCDC88C-203ENST00000389856 FCGRTP55899 365 aa19.93■□□□□ 0.78
CCDC88C-203ENST00000389856 PCMTD1Q96MG8 357 aaPredicted RBP19.93■□□□□ 0.78
CCDC88C-203ENST00000389856 ERGIC2Q96RQ1 377 aa19.93■□□□□ 0.78
CCDC88C-203ENST00000389856 TELO2Q9Y4R8 837 aa19.93■□□□□ 0.78
CCDC88C-203ENST00000389856 ZMYM2Q9UBW7 1377 aa19.93■□□□□ 0.78
CCDC88C-203ENST00000389856 TGFB1I1O43294 461 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 PPFIA4O75335 1185 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 NPTX2P47972 431 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 RBL2Q08999 1139 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 TARBP2Q15633 366 aaKnown RBP19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 TSR1Q2NL82 804 aaKnown RBP19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 C12orf56Q8IXR9 622 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 NPLOC4Q8TAT6 608 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 EEF2KMTQ96G04 330 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 GPRC5CQ9NQ84 441 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 AGPAT3Q9NRZ7 376 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 DNAI1Q9UI46 699 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 TRPC6Q9Y210 931 aa19.92■□□□□ 0.78
CCDC88C-203ENST00000389856 SLC16A4O15374 487 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 MAFO75444 373 aaPredicted RBP19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 ADCYAP1R1P41586 468 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 GRM1Q13255 1194 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 MIIPQ5JXC2 388 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 TRIM59Q8IWR1 403 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 COPS5Q92905 334 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 KCNN1Q92952 543 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 XPNPEP1Q9NQW7 623 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 XRCC5P13010 732 aaKnown RBP19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 NAMPTP43490 491 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 TUBB2AQ13885 445 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 PLCB4Q15147 1175 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 DEFB115Q30KQ5 88 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 FIGNQ5HY92 759 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 ZNF484Q5JVG2 852 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 IER5Q5VY09 327 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 TMEM161BQ8NDZ6 487 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 ZNF397Q8NF99 534 aaPredicted RBP19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 USP6NLQ92738 828 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 TUBB2BQ9BVA1 445 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 CREBZFQ9NS37 354 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 TBX20Q9UMR3 447 aa19.91■□□□□ 0.78
CCDC88C-203ENST00000389856 COL1A2P08123 1366 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 DENND3A2RUS2 1198 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 TRIM21P19474 475 aaKnown RBP19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 TNFAIP2Q03169 654 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 GOLGA8FQ08AF8 430 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 GOLGA8DPQ0D2H9 430 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 STRN3Q13033 797 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 BRDTQ58F21 947 aaPredicted RBP19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 CYP4F22Q6NT55 531 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 MAP4K3Q8IVH8 894 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 FAM186BQ8IYM0 893 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 OR6J1Q8NGC5 347 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 DEPTORQ8TB45 409 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 MGAMO43451 1857 aa19.9■□□□□ 0.78
CCDC88C-203ENST00000389856 RASSF10A6NK89 507 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms