RNA–Protein interactions for RNA: ENST00000361311.4

CLSTN1-201, Transcript of calsyntenin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLSTN1, Length 4,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-201ENST00000361311 RTCBQ9Y3I0 505 aaKnown RBP17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 CEP170BQ9Y4F5 1589 aaPredicted RBP17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 CNTNAP5Q8WYK1 1306 aa17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 SPECC1L-ADORA2AF8WAN1 911 aa17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 TRAPPC3O43617 180 aa17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 GGPS1O95749 300 aa17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 SLC9A1P19634 815 aa17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 SOX5P35711 763 aa17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 MEA1Q16626 185 aa17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 SUCLA2Q9P2R7 463 aaPredicted RBP17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 CNOT8Q9UFF9 292 aaKnown RBP17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 THRAP3Q9Y2W1 955 aaKnown RBP17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 KCTD1Q719H9 257 aa17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 COL23A1Q86Y22 540 aaPredicted RBP17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 SPDYE1Q8NFV5 336 aaPredicted RBP17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 SNF8Q96H20 258 aa17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 NAF1Q96HR8 494 aaKnown RBP17.11■□□□□ 0.33
CLSTN1-201ENST00000361311 ANXA13P27216 316 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 COPB2P35606 906 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 KRT17Q04695 432 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 ZNF844Q08AG5 666 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 FRMD5Q7Z6J6 570 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 ZNF564Q8TBZ8 553 aaPredicted RBP17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 TBC1D22AQ8WUA7 517 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 OLFM3Q96PB7 478 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 ROPN1BQ9BZX4 212 aaPredicted RBP17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 ROPN1Q9HAT0 212 aaPredicted RBP17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 ZNF335Q9H4Z2 1342 aaPredicted RBP17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 hCG_2014768A0A024R1R8 64 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 DNAJC8O75937 253 aaPredicted RBP17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 NT5C2P49902 561 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 BSPRYQ5W0U4 402 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 AMNQ9BXJ7 453 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 WNT8AQ9H1J5 351 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 MAD1L1Q9Y6D9 718 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 TCP10Q12799 353 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 RASA3Q14644 834 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 HP1BP3Q5SSJ5 553 aaPredicted RBP17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 FAM102BQ5T8I3 360 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 PACSIN1Q9BY11 444 aa17.1■□□□□ 0.33
CLSTN1-201ENST00000361311 KRT1P04264 644 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 ERFP50548 548 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 STAT4Q14765 748 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 SLC44A5Q8NCS7 719 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 ZNF512BQ96KM6 892 aaPredicted RBP17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 TTC7AQ9ULT0 858 aaPredicted RBP17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 NEURL4Q96JN8 1562 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 PFASO15067 1338 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 ERVV-1B6SEH8 477 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 SNUPNO95149 360 aaKnown RBP17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 PRDX5P30044 214 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 SERPINB4P48594 390 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 AP2B1P63010 937 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 ERVK-9P63128 1117 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 TROAPQ12815 778 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 SUSD4Q5VX71 490 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 SLFN13Q68D06 897 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 PDIK1LQ8N165 341 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 GDF3Q9NR23 364 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 GINM1Q9NU53 330 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 KBTBD4Q9NVX7 518 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 DDR1Q08345 913 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 MEI1Q5TIA1 1274 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 TPCN2Q8NHX9 752 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 TTC25Q96NG3 672 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 MRPL47Q9HD33 250 aaKnown RBP17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 GGA2Q9UJY4 613 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 NAGPAQ9UK23 515 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 CDK8P49336 464 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 BASP1P80723 227 aaKnown RBP17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 NLRP7Q8WX94 980 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 DTNBP1Q96EV8 351 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 NUP85Q9BW27 656 aa17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 PAPOLBQ9NRJ5 636 aaKnown RBP17.09■□□□□ 0.33
CLSTN1-201ENST00000361311 GNAT1P11488 350 aa17.08■□□□□ 0.33
CLSTN1-201ENST00000361311 MARK3P27448 753 aa17.08■□□□□ 0.33
CLSTN1-201ENST00000361311 TBC1D10BQ4KMP7 808 aaPredicted RBP17.08■□□□□ 0.33
CLSTN1-201ENST00000361311 PNMA6FA0A0J9YX94 578 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 POTEFA5A3E0 1075 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 IPO5O00410 1097 aaKnown RBP17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 TTLL1O95922 423 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 POTEIP0CG38 1075 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 DYNLT1P63172 113 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 ELF3P78545 371 aaPredicted RBP17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 TMPRSS15P98073 1019 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 POTEGQ6S5H5 508 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 POTEEQ6S8J3 1075 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 CNBD1Q8NA66 436 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 C9orf72Q96LT7 481 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 TRABDQ9H4I3 376 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 IQANK1A0A1B0GTG1 560 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 F8VZ95 297 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 GNPATO15228 680 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 HNRNPCL1O60812 293 aaKnown RBP17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 ARHGAP4P98171 946 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 KYNUQ16719 465 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 TBC1D9BQ66K14 1250 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 SH3RF1Q7Z6J0 888 aa17.08■□□□□ 0.32
CLSTN1-201ENST00000361311 ACTRT1Q8TDG2 376 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms