RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 DHX36Q9H2U1 1008 aaKnown RBP17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 FBXO2Q9UK22 296 aaPredicted RBP17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 PCDHA6Q9UN73 950 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 PPME1Q9Y570 386 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 PCDHA8Q9Y5H6 950 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 WDR17Q8IZU2 1322 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 PI4K2BG5E9Z4 385 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 SRGAP2CP0DJJ0 459 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 KNOP1Q1ED39 458 aaKnown RBP17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 ANKRD40Q6AI12 368 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 RYBPQ8N488 228 aaPredicted RBP17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 ZNF564Q8TBZ8 553 aaPredicted RBP17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 SEC16BQ96JE7 1060 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 CACYBPQ9HB71 228 aaKnown RBP17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 NOD2Q9HC29 1040 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 SNX12Q9UMY4 172 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 FXR1P51114 621 aaKnown RBP eCLIP17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 ALCAMQ13740 583 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 C1orf146Q5VVC0 180 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 FAM196AQ6ZSG2 479 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 TRIM59Q8IWR1 403 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 GUF1Q8N442 669 aaKnown RBP17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 XXYLT1Q8NBI6 393 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 CYFIP2Q96F07 1278 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 MS4A14Q96JA4 679 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 NUP85Q9BW27 656 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 TRIM10Q9UDY6 481 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 L1RE1Q9UN81 338 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 SLC4A7Q9Y6M7 1214 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 PLA2R1Q13018 1463 aa17.57■□□□□ 0.4
SH3RF1-201ENST00000284637 POTEFA5A3E0 1075 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 POTEIP0CG38 1075 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 EPHB1P54762 984 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 MDM2Q00987 491 aaPredicted RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 SCARF1Q14162 830 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 TMEM259Q4ZIN3 620 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 PDXDC2PQ6P474 469 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 POTEGQ6S5H5 508 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 POTEEQ6S8J3 1075 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 MIGA2Q7L4E1 593 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 HPS3Q969F9 1004 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 KRT82Q9NSB4 513 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 A0A1B0GTH6 734 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 GSG1L2A8MUP6 293 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 BBOX1O75936 387 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 EXOSC10Q01780 885 aaKnown RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 CDR2Q01850 454 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 OCRLQ01968 901 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 SPOUT1Q5T280 376 aaKnown RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 CCDC137Q6PK04 289 aaKnown RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 ATP2C1P98194 919 aaPredicted RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 LRRC4Q9HBW1 653 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 DCP1AQ9NPI6 582 aaPredicted RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 ZBTB5O15062 677 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 CYP27B1O15528 508 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 CHRNA3P32297 505 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 CACNB3P54284 484 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 TMEM154Q6P9G4 183 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 STAG2Q8N3U4 1231 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 GRAMD1AQ96CP6 724 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 RPS6KC1Q96S38 1066 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 APOBEC2Q9Y235 224 aaKnown RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 FAM205CA6NFA0 338 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 S100BP04271 92 aaPredicted RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 PSMD7P51665 324 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 KCTD2Q14681 263 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 PDXDC1Q6P996 788 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 SGMS1Q86VZ5 419 aa17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 RBM41Q96IZ5 413 aaKnown RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 SRP68Q9UHB9 627 aaKnown RBP17.56■□□□□ 0.4
SH3RF1-201ENST00000284637 RASGRP2Q7LDG7 609 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 RSPH3Q86UC2 560 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 TTC1Q99614 292 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 TMEM270Q6UE05 265 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 C1orf54Q8WWF1 131 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 BCS1LQ9Y276 419 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 ARHGAP31Q2M1Z3 1444 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 TTI1O43156 1089 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 XPOTO43592 962 aaKnown RBP17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 TDP2O95551 362 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 KRT10P13645 584 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 NR1H3Q13133 447 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 RAD9BQ6WBX8 426 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 THNSL1Q8IYQ7 743 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 CNKSR1Q969H4 720 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 SLITRK6Q9H5Y7 841 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 CCDC195A0A1B0GUA6 201 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 KPNA2P52292 529 aaKnown RBP17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 AP3B2Q13367 1082 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 TRIM67Q6ZTA4 783 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 ORC6Q9Y5N6 252 aa17.55■□□□□ 0.4
SH3RF1-201ENST00000284637 TRIM49P0CI25 452 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 TRIM49CP0CI26 452 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 CCND2P30279 289 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 FAM182BQ5T319 152 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 TEKT4Q8WW24 435 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 CDHR1Q96JP9 859 aa17.54■□□□□ 0.4
SH3RF1-201ENST00000284637 KLC2Q9H0B6 622 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms