RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CRELD2Q6UXH1 353 aaPredicted RBP15.51■□□□□ 0.07
SDC1-201ENST00000254351 TRMT1LQ7Z2T5 733 aaKnown RBP15.51■□□□□ 0.07
SDC1-201ENST00000254351 ZNF34Q8IZ26 560 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 CRAMP1Q96RY5 1269 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 USP40Q9NVE5 1235 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 PCDHA12Q9UN75 941 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 CFAP73A6NFT4 308 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 HIP1RO75146 1068 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 AKAP3O75969 853 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 ZCWPW2Q504Y3 356 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 PHLDB2Q86SQ0 1253 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 SRRM1Q8IYB3 904 aaKnown RBP15.5■□□□□ 0.07
SDC1-201ENST00000254351 CTNNBL1Q8WYA6 563 aaPredicted RBP15.5■□□□□ 0.07
SDC1-201ENST00000254351 A0A1B0GVG6 124 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 PLA2G4BP0C869 781 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 STX2P32856 288 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 GNAQP50148 359 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 POLE2P56282 527 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 MESDQ14696 234 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 RBM26Q5T8P6 1007 aaKnown RBP15.5■□□□□ 0.07
SDC1-201ENST00000254351 DUPD1Q68J44 220 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 RFX8Q6ZV50 586 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 SPATA21Q7Z572 469 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 LNX1Q8TBB1 728 aaPredicted RBP15.5■□□□□ 0.07
SDC1-201ENST00000254351 ELMO3Q96BJ8 720 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 TGS1Q96RS0 853 aaKnown RBP15.5■□□□□ 0.07
SDC1-201ENST00000254351 BATF3Q9NR55 127 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 METTL5Q9NRN9 209 aaKnown RBP15.5■□□□□ 0.07
SDC1-201ENST00000254351 G3BP2Q9UN86 482 aaKnown RBP15.5■□□□□ 0.07
SDC1-201ENST00000254351 RSPH10B2B2RC85 870 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 IRF6O14896 467 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 KIAA0391O15091 583 aaKnown RBP15.5■□□□□ 0.07
SDC1-201ENST00000254351 RSPH10BP0C881 870 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 PSMC6P62333 389 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 MPP2Q14168 576 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 GRIK5Q16478 980 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 TTC27Q6P3X3 843 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 SYN2Q92777 582 aaPredicted RBP15.5■□□□□ 0.07
SDC1-201ENST00000254351 TSC22D3Q99576 134 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 RAB34Q9BZG1 259 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 ZFATQ9P243 1243 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 CTTNBP2NLQ9P2B4 639 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 STK17AQ9UEE5 414 aa15.5■□□□□ 0.07
SDC1-201ENST00000254351 ONECUT3O60422 494 aaPredicted RBP15.49■□□□□ 0.07
SDC1-201ENST00000254351 ENTPD5O75356 428 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 SPAG7O75391 227 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 AFPP02771 609 aaKnown RBP15.49■□□□□ 0.07
SDC1-201ENST00000254351 FGRP09769 529 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 PSMD2Q13200 908 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 CCDC137Q6PK04 289 aaKnown RBP15.49■□□□□ 0.07
SDC1-201ENST00000254351 DGKHQ86XP1 1220 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 TTC8Q8TAM2 541 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 EDEM3Q9BZQ6 932 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 DDX25Q9UHL0 483 aaKnown RBP15.49■□□□□ 0.07
SDC1-201ENST00000254351 RFC4P35249 363 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 PTENP60484 403 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 UBE4AQ14139 1066 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 ERFEQ4G0M1 354 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 C6orf118Q5T5N4 469 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 RNF220Q5VTB9 566 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 CCDC65Q8IXS2 484 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.49■□□□□ 0.078e-8■■■■■ 27.2
SDC1-201ENST00000254351 ERP27Q96DN0 273 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 MTMR9Q96QG7 549 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 ACP6Q9NPH0 428 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 SUCLA2Q9P2R7 463 aaPredicted RBP15.49■□□□□ 0.07
SDC1-201ENST00000254351 INTUQ9ULD6 942 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 MINPP1Q9UNW1 487 aa15.49■□□□□ 0.07
SDC1-201ENST00000254351 GSTA1P08263 222 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 BRAFP15056 766 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 POU5F1Q01860 360 aaKnown RBP15.48■□□□□ 0.07
SDC1-201ENST00000254351 MGAT5Q09328 741 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 MAPK7Q13164 816 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 CTTNQ14247 550 aaKnown RBP15.48■□□□□ 0.07
SDC1-201ENST00000254351 KYNUQ16719 465 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 ZDHHC14Q8IZN3 488 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 C1orf54Q8WWF1 131 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 HES6Q96HZ4 224 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 QTRT2Q9H974 415 aaKnown RBP15.48■□□□□ 0.07
SDC1-201ENST00000254351 KCNMB3Q9NPA1 279 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 COG5Q9UP83 839 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 PALM3A6NDB9 673 aaPredicted RBP15.48■□□□□ 0.07
SDC1-201ENST00000254351 RIPK2O43353 540 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 TRIM49P0CI25 452 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 TRIM49CP0CI26 452 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 SLURP2P0DP57 97 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 SFR1Q86XK3 245 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 PROM2Q8N271 834 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 RPS6KC1Q96S38 1066 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 EYA3Q99504 573 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 ATP8A2Q9NTI2 1148 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 MTRF1LQ9UGC7 380 aaKnown RBP15.48■□□□□ 0.07
SDC1-201ENST00000254351 TIAM2Q8IVF5 1701 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 CBX6O95503 412 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 STAT1P42224 750 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 RBBP5Q15291 538 aaKnown RBP15.48■□□□□ 0.07
SDC1-201ENST00000254351 C12orf60Q5U649 245 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 SLC30A9Q6PML9 568 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 SYCE1Q8N0S2 351 aa15.48■□□□□ 0.07
SDC1-201ENST00000254351 SUPT20HQ8NEM7 779 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 190.2 ms